Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m22
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818... 30 0.76
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 29 1.7
03_06_0391 - 33577872-33578093,33578556-33579218 28 4.0
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 5.3
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 5.3
11_01_0611 - 4894342-4895448 27 7.1
07_01_0031 + 251818-252867 27 7.1
03_01_0281 + 2160480-2162003 27 7.1
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 27 9.3
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 27 9.3
01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532... 27 9.3
>04_04_0333 -
24481029-24481109,24481185-24481253,24481785-24481853,
24481923-24481944,24482302-24482393,24482688-24482803,
24482899-24483042,24483287-24483476
Length = 260
Score = 30.3 bits (65), Expect = 0.76
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 108 PGQVIRPIIDHEQVKLLAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNHSP 281
PG + +++ VK+ RL +SVLD L+ YD + K E + +PL N +P
Sbjct: 111 PGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTP 170
Query: 282 YG 287
G
Sbjct: 171 DG 172
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 174 GISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQ-- 347
G+ L+ T NG +K Y +P + P++T S + I++S S +E Q
Sbjct: 92 GLCQLEFT--NGQVEKRYLSRTEPKLPVPIVTCESALWRGVSILDSDSSGITMELELQWD 149
Query: 348 ---NEIMNFLATRSVTCPKPVRNI 410
N +++ T ++ P V+NI
Sbjct: 150 GNPNIVLDIQTTLGISLPVQVKNI 173
>03_06_0391 - 33577872-33578093,33578556-33579218
Length = 294
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Frame = -1
Query: 168 DARPVASPARGRLSD------G*PAPAPVVASRQ 85
D+ P+A+PAR R S P+PAP V +RQ
Sbjct: 137 DSHPIATPARSRASQLEVVPAAGPSPAPPVEARQ 170
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 123 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKL 233
+ I+DH+QV LL + Y IS+ + +DKN+ +
Sbjct: 251 KKILDHDQVVLLGDLNYRISLEEAETRLLVEDKNWSI 287
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 386 GHGASGQKIHNLILGLDNADVLRVNRIHDLEDVA 285
GHG G + N + + DVL V R H + ++
Sbjct: 359 GHGGGGVRCKNSLFRVKEGDVLVVPRFHPMAQIS 392
>11_01_0611 - 4894342-4895448
Length = 368
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 95 ATTGAGAG-YPSDNRPRAGEATG-RASLRDIRAGPDRAERLRRQELQADRG 241
A G GAG + + P +A R L D+RA AERL R+ + + G
Sbjct: 151 AENGGGAGGWWLEEEPGGDDAGAIRHRLSDVRAAVSEAERLGRKIMSSSSG 201
>07_01_0031 + 251818-252867
Length = 349
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 116 GYPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 217
GY + P A E R + R IRA PD A L R
Sbjct: 49 GYYRETCPHAEEMVFRETARIIRASPDLAAALLR 82
>03_01_0281 + 2160480-2162003
Length = 507
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 189 DLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEA 344
+L +NG + +T DP+ PL+ H+ L++ + ++ GV+ A
Sbjct: 333 ELDSVNGITTPDGMVTFDPDELRPLVYLHAALSETLRLYPPVPLEHKGVLAA 384
>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 171 YGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPY-GYVLKIMNSI 314
Y + ++ T+LNG DDK ++ +I N P G L+++ S+
Sbjct: 1070 YSLRIVGKTDLNGLDDKILAFYNLTQLQELMINNCPPLAGCYLQMLTSL 1118
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 381 VTCPKPVRNIFGHLHSIEDLGGKK 452
+ C KP RNI+G L ++ DL G++
Sbjct: 280 IKCEKPNRNIYGFLATV-DLDGRR 302
>01_07_0351 +
42952504-42952692,42952824-42952910,42953039-42953257,
42953329-42953502,42954799-42954852,42954983-42955123,
42955599-42955637,42956689-42957045
Length = 419
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 453 VSCLPGPRWSVDDRIYSVLAWDRSRSEWPKN 361
VS GP++ D ++ VLA DR + PK+
Sbjct: 272 VSIYGGPQYEYDYLVWKVLAGDRRHHQRPKD 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,488
Number of Sequences: 37544
Number of extensions: 194539
Number of successful extensions: 719
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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