Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m22
         (453 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132753-1|AAI32754.1|  226|Homo sapiens LOC123688 protein protein.    50   5e-06
AK126453-1|BAC86556.1|  172|Homo sapiens protein ( Homo sapiens ...    50   5e-06
Y00762-1|CAA68731.1|  457|Homo sapiens protein ( Human mRNA for ...    33   0.35 
X02502-1|CAA26344.1|  457|Homo sapiens acetylcholine receptor pr...    33   0.35 
S77094-1|AAD14247.1|  457|Homo sapiens nicotinic acetylcholine r...    33   0.35 
BC006314-1|AAH06314.1|  269|Homo sapiens CHRNA1 protein protein.       33   0.35 
AC018890-1|AAY14687.1|  457|Homo sapiens unknown protein.              33   0.35 
BC034028-1|AAH34028.1|  387|Homo sapiens SHANK-associated RH dom...    29   5.6  
BC025244-1|AAH25244.1|  326|Homo sapiens SHARPIN protein protein.      29   5.6  
AK075518-1|BAC11666.1|  410|Homo sapiens protein ( Homo sapiens ...    29   5.6  
AB052765-1|BAC53798.1|  156|Homo sapiens shank-interacting prote...    29   5.6  
AB052764-1|BAC53797.1|  345|Homo sapiens shank-interacting prote...    29   5.6  

>BC132753-1|AAI32754.1|  226|Homo sapiens LOC123688 protein protein.
          Length = 226

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 28/82 (34%), Positives = 41/82 (50%)
 Frame = +3

Query: 123 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 302
           +P    EQ   L E ++G+ V  +  L  YDD+N+ +           T   P  YVLKI
Sbjct: 14  KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66

Query: 303 MNSIDSQNVGVVEAQNEIMNFL 368
            N+  S+N  ++E QN I+ FL
Sbjct: 67  SNTKASKNPDLIEVQNHIIMFL 88


>AK126453-1|BAC86556.1|  172|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44489 fis, clone UTERU2035114. ).
          Length = 172

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 28/82 (34%), Positives = 41/82 (50%)
 Frame = +3

Query: 123 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 302
           +P    EQ   L E ++G+ V  +  L  YDD+N+ +           T   P  YVLKI
Sbjct: 14  KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66

Query: 303 MNSIDSQNVGVVEAQNEIMNFL 368
            N+  S+N  ++E QN I+ FL
Sbjct: 67  SNTKASKNPDLIEVQNHIIMFL 88


>Y00762-1|CAA68731.1|  457|Homo sapiens protein ( Human mRNA for
           muscle acetylcholine receptor alpha-subunit. ).
          Length = 457

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 90  AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
           AKL  +   V+RP+ DH QV  +   L  I ++++ E+N     N +L +     N L  
Sbjct: 29  AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87

Query: 270 NHSPYGYVLKI 302
           N   YG V KI
Sbjct: 88  NPDDYGGVKKI 98


>X02502-1|CAA26344.1|  457|Homo sapiens acetylcholine receptor
           protein.
          Length = 457

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 90  AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
           AKL  +   V+RP+ DH QV  +   L  I ++++ E+N     N +L +     N L  
Sbjct: 29  AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87

Query: 270 NHSPYGYVLKI 302
           N   YG V KI
Sbjct: 88  NPDDYGGVKKI 98


>S77094-1|AAD14247.1|  457|Homo sapiens nicotinic acetylcholine
           receptor alpha subunit|AChR protein.
          Length = 457

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 90  AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
           AKL  +   V+RP+ DH QV  +   L  I ++++ E+N     N +L +     N L  
Sbjct: 29  AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87

Query: 270 NHSPYGYVLKI 302
           N   YG V KI
Sbjct: 88  NPDDYGGVKKI 98


>BC006314-1|AAH06314.1|  269|Homo sapiens CHRNA1 protein protein.
          Length = 269

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 90  AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
           AKL  +   V+RP+ DH QV  +   L  I ++++ E+N     N +L +     N L  
Sbjct: 29  AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87

Query: 270 NHSPYGYVLKI 302
           N   YG V KI
Sbjct: 88  NPDDYGGVKKI 98


>AC018890-1|AAY14687.1|  457|Homo sapiens unknown protein.
          Length = 457

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +3

Query: 90  AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
           AKL  +   V+RP+ DH QV  +   L  I ++++ E+N     N +L +     N L  
Sbjct: 29  AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87

Query: 270 NHSPYGYVLKI 302
           N   YG V KI
Sbjct: 88  NPDDYGGVKKI 98


>BC034028-1|AAH34028.1|  387|Homo sapiens SHANK-associated RH domain
           interactor protein.
          Length = 387

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 104 GAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQELQAD 235
           G  A   SD    A      A++R + AGPD   +LRR +L AD
Sbjct: 6   GGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRLQLSAD 49


>BC025244-1|AAH25244.1|  326|Homo sapiens SHARPIN protein protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 104 GAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQELQAD 235
           G  A   SD    A      A++R + AGPD   +LRR +L AD
Sbjct: 6   GGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRLQLSAD 49


>AK075518-1|BAC11666.1|  410|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0216 fis, clone HEMBA1004633. ).
          Length = 410

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 104 GAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQELQAD 235
           G  A   SD    A      A++R + AGPD   +LRR +L AD
Sbjct: 6   GGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRLQLSAD 49


>AB052765-1|BAC53798.1|  156|Homo sapiens shank-interacting
           protein-like 1 beta protein.
          Length = 156

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 104 GAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQELQAD 235
           G  A   SD    A      A++R + AGPD   +LRR +L AD
Sbjct: 6   GGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRLQLSAD 49


>AB052764-1|BAC53797.1|  345|Homo sapiens shank-interacting
           protein-like 1 alpha protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 104 GAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQELQAD 235
           G  A   SD    A      A++R + AGPD   +LRR +L AD
Sbjct: 6   GGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRLQLSAD 49


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,972,057
Number of Sequences: 237096
Number of extensions: 1105456
Number of successful extensions: 2871
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)