Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m22
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.17 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.17 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   0.89 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 144 QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 275
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 236 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 284


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 144 QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 275
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 326 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 374


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 116 GYPSDNRPRAGEAT 157
           GYP D +PRAG  T
Sbjct: 642 GYPFDRQPRAGVET 655


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 261 LITNHSPYGYVLKIMNSIDSQNVGVVEAQNE 353
           ++T  SPYGYV  I    +     +V  QNE
Sbjct: 318 ILTPVSPYGYVKPISPEQEELIHRLVYFQNE 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = -3

Query: 85  VILPVNFRQTNKQFSINTSVPLHSWV 8
           ++LP    +  +   +  +VP+H+W+
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWI 543


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 249 MKNPLITNHSPYGYVLKIMNSID 317
           M  P    + PY   ++I++S+D
Sbjct: 460 MSRPFEVRYDPYTQRVEILDSVD 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,320
Number of Sequences: 438
Number of extensions: 2114
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)