Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m17
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 56 3e-08
01_01_1152 + 9170628-9171899 52 3e-07
11_02_0011 - 7337618-7338496,7338596-7338991 46 3e-05
11_02_0012 - 7346282-7347136,7347234-7347593 43 2e-04
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.006
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 36 0.032
11_02_0014 - 7352619-7352918,7353173-7353418 35 0.056
11_01_0771 + 6453130-6454488 34 0.074
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 33 0.13
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 1.6
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.1
05_05_0373 - 24478361-24479383 29 2.8
02_01_0384 - 2781362-2782299,2782320-2782428 29 2.8
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 3.7
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 4.8
05_06_0044 - 25150322-25151260 28 4.8
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 6.4
01_06_0373 - 28841462-28842850 28 6.4
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 27 8.5
10_02_0112 + 5385660-5385821,5386337-5386876 27 8.5
08_01_0123 + 974941-975186,975274-977505 27 8.5
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 55.6 bits (128), Expect = 3e-08
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Frame = +1
Query: 178 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 333
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 334 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 510
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 511 NTNNRIKDLVNPDSLSSATAAVLVNAI 591
T RIKD + D++ AT AVL NA+
Sbjct: 152 ATAGRIKDFLPKDAVDRATPAVLGNAL 178
>01_01_1152 + 9170628-9171899
Length = 423
Score = 52.4 bits (120), Expect = 3e-07
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +1
Query: 175 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 351
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 352 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRI 528
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 SF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 529 KDLVNPDSLSSATAAVLVNAI 591
+D++ P+S+ S+T VL NA+
Sbjct: 176 RDVLPPNSVDSSTVVVLANAV 196
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 45.6 bits (103), Expect = 3e-05
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Frame = +1
Query: 178 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDLRSIK 345
K++V S S+ LA +A + G T +ELL +G DD +++R D +
Sbjct: 31 KNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 346 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNN 522
G + A V+ + +L + + + + + +F + + K IN WV + TN
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 523 RIKDLVNPDSLSSATAAVLVNAI 591
I +++ S+ TA VLVNAI
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAI 173
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 42.7 bits (96), Expect = 2e-04
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Frame = +1
Query: 166 NNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDL 333
+N ++VV S S+ LA +A + G T +EL+ +G DD +++R D
Sbjct: 27 DNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADE 86
Query: 334 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 510
G + A V+ HD E A+ + + + DF + ++ K IN WV +
Sbjct: 87 SESGGPRVSYACGVW-HD-----ERLAL--KPAYRA----ADFQRQPKSSRKKINKWVSK 134
Query: 511 NTNNRIKDLVNPDSLSSATAAVLVNAI 591
TN I++++ S+ TA VLVNAI
Sbjct: 135 ATNKLIREILPDGSVHGGTALVLVNAI 161
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 433 FNSDVQNIDFSKNTVAA-KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAI 591
+ +DF + V A K IN WV T N I +++ P+S S T V+ NAI
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAI 95
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 466 KNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAI 591
K A +N WVE+ T+ IK+++ P S+ T VL NA+
Sbjct: 209 KAAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNAL 250
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 490 INDWVEENTNNRIKDLVNPDSLSSATAAVLVNAI 591
+N WV+ T+ IK++ P S++ T VL NA+
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANAL 502
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 484 KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAI 591
K IN+WV + TN I +++ S+ T VLVNAI
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAI 123
>11_01_0771 + 6453130-6454488
Length = 452
Score = 34.3 bits (75), Expect = 0.074
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 397 LDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAV 576
+D ++ + + V ++ K A K IN W T I D++ P S+ TA V
Sbjct: 146 IDAFILLLDPSMIDQCVLDLVSEKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVV 205
Query: 577 LVNAI 591
L NAI
Sbjct: 206 LGNAI 210
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 481 AKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAI 591
A +N WV+ T+ IK+++ P S+ T VL NA+
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNAL 42
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 369 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 235
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 286 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 411
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>05_05_0373 - 24478361-24479383
Length = 340
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 475 VAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLV 582
VA + +DW E + ++ D V PD+LSS AAV +
Sbjct: 153 VALREPHDWGESTAHAQL-DAVAPDALSSCDAAVFL 187
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -2
Query: 356 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 189
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 304 TEFASKSRDLRSIKGVELKMANKVYVHDG 390
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 344 LIDRRSRLLLANSVRIASSSGK 279
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>05_06_0044 - 25150322-25151260
Length = 312
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 373 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDLVN 543
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+++
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILS 57
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 305 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 472
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 187 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 330
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 304 TEFASKSRDLRSIKGVELKMANKVYVHDG 390
T+ S S+D++ ++ V+ + N VHDG
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDG 167
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 52 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPGKSVVLSAFSVLPPLAQ 225
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 226 LALASDGETHEELLK 270
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 151 TEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDD 291
T ++ +P +L L +A A A+DG H L +G PDD
Sbjct: 617 TNILNYSPCSVAILVDRGSLSTVAAAAAAADGFPHRVALYFLGGPDD 663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,481
Number of Sequences: 37544
Number of extensions: 294410
Number of successful extensions: 663
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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