Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m16
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 31 0.34
04_03_0119 + 11485753-11486202 30 0.60
11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916... 29 1.0
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 29 1.4
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 29 1.4
01_05_0746 + 24856362-24856710,24856799-24856986 29 1.4
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 28 2.4
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402 28 3.2
02_03_0163 + 15859293-15860333 28 3.2
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 27 4.2
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883... 27 5.6
01_05_0811 - 25438713-25438857,25438974-25439221,25439428-254396... 27 5.6
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477... 27 7.3
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 27 7.3
02_01_0341 + 2444419-2445495 27 7.3
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148... 26 9.7
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 26 9.7
08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394... 26 9.7
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 26 9.7
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 26 9.7
05_04_0099 - 17991569-17993014 26 9.7
02_05_0486 - 29423756-29423965,29425424-29425528 26 9.7
02_02_0607 - 12088810-12089105,12089200-12090208 26 9.7
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 85 SDTVPLRFAWVCIRRPPSWS-PLGRGCCQLQNG*AKPARHHSVRLRIRTSKT*DRGA*LK 261
S+ +FAW+C++ S + + + C L G +P R S+R+ R + +GA L
Sbjct: 463 SELSDAKFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIAFRKAGEEAKGAALA 522
Query: 262 VDS 270
D+
Sbjct: 523 SDA 525
>04_03_0119 + 11485753-11486202
Length = 149
Score = 30.3 bits (65), Expect = 0.60
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 28 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 150
G ++ WCSS P P A S L C RR SPL
Sbjct: 69 GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109
>11_03_0042 -
9167881-9168075,9168159-9168251,9168328-9168409,
9168495-9168605,9171653-9171898,9172448-9173073,
9173402-9173422
Length = 457
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = -1
Query: 277 SSKSLPSARH----RDLMSLKS*YVAGPNDDGR-VSPSHFVA 167
S+++ P +H R+LM ++ Y+A NDDG+ V P H +A
Sbjct: 40 SARARPKKKHGDRSRNLMPNETYYIAALNDDGKPVEPQHVMA 81
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 351 SEPSDG--PVQALLVVEGCGPRPETRGLRRVYLQLGTAILCL*SPDT 217
+EPS G P A VE PR + RG RRV L L + PDT
Sbjct: 71 AEPSGGAAPAAANGEVEITKPRNDKRGYRRVVLPNALECLVISDPDT 117
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 68 CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVVAASYKMA 181
C ++P R ++S SRG A+ HL RR + A ++M+
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRMS 145
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 79 ARSDTVPLRFAWVCIRRPPSW 141
ARSDT P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 183 GETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPEFPAVDRSPLLQGEPGQ 332
G+T P +GP T D++D + R CL E P ++ S G G+
Sbjct: 176 GKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGE 226
>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
Length = 346
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 272 RRPRVSGRGPQPSTTRRAWTGPSLGSDLGKSA 367
RR RVSG G T++ P+ SDLG+ +
Sbjct: 11 RRSRVSGEGSSAPTSKVRRGNPTASSDLGQDS 42
>02_03_0163 + 15859293-15860333
Length = 346
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 116 SASVGRHLGRRWGVVAASYKMARRNPPVIIRSG 214
SAS+ GRRW +VA++ A PV RSG
Sbjct: 196 SASLRDFWGRRWNLVASAVLRAAVYDPVRARSG 228
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +2
Query: 275 RPRVSGR--GPQPSTTRRAWTGP 337
RPR GR GP P+ + W GP
Sbjct: 1040 RPRTRGRRRGPSPAIQKACWAGP 1062
>11_02_0151 +
8837444-8837876,8838173-8839434,8839517-8839885,
8839963-8840223,8840230-8840442,8840602-8840967,
8841402-8841667,8842087-8842197,8842288-8842317,
8842444-8842465
Length = 1110
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 298 STAGNSGSSKSLPSARHRDLMSLKS*YVAGPNDDGR 191
+T +K R R+LM ++ Y+A NDDG+
Sbjct: 595 TTTSGEACAKKKRGKRSRNLMPKETYYIAALNDDGK 630
>01_05_0811 -
25438713-25438857,25438974-25439221,25439428-25439616,
25439771-25439924,25440012-25440157
Length = 293
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 220 YVAGPNDDGRVSPSHFVAGSNHAPAATKMAADG 122
Y G DGRV+ SH + + AP TK DG
Sbjct: 256 YGDGSKTDGRVAWSHDLTQAEAAPFITKAWVDG 288
>11_06_0051 -
19645726-19646007,19646045-19646513,19647749-19647771,
19647978-19648328
Length = 374
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +1
Query: 130 PPSWSPLGRGCC---QLQNG*AKPARHHSVRLRIRTSKT*DR 246
PP +SP+G GC + + K A H ++ R + S+ DR
Sbjct: 27 PPGYSPVGGGCALAVECSSRPQKKATKHHMKTRPKKSQPWDR 68
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 104 VSRGSASVGRHLGRRWGVVAAS 169
VS G AS+GRHL RR V S
Sbjct: 9 VSAGEASLGRHLARRLVQVGVS 30
>02_01_0341 + 2444419-2445495
Length = 358
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 43 WCSSGTKPVPFCARSDTVPLRFAW 114
W +G +PFC R++ VP W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239
>09_04_0117 +
14813472-14814113,14814194-14814404,14814552-14814846,
14815059-14815448,14815528-14815605,14815692-14815926
Length = 616
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -1
Query: 283 SGSSKSLPSARHRDLMSLKS*YVAGPNDDGRVSPSHFVAGSNHAPAATKMAADGCRPTRN 104
S +K L + R+R++M + + + G SP +V N P +KM+ G R
Sbjct: 450 SSVNKYLLTGRYRNIMDMNAGF--GGFAAAIESPKSWVM--NAVPTISKMSTLGAIYERG 505
Query: 103 AMGLYPTW 80
+G+Y W
Sbjct: 506 LIGIYHDW 513
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 71 GTGLVPELHHTNTSPQKHDD 12
G G V E+ HT PQ+H D
Sbjct: 3 GGGFVNEMRHTGKRPQQHRD 22
>08_01_0445 +
3942820-3943030,3943719-3943853,3943942-3944150,
3944258-3944464
Length = 253
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 113 GSASVGRHLGRRWGVVAASYKMA 181
GS S+GR+ G RW V A + + A
Sbjct: 23 GSGSLGRYSGLRWPVAAQARRAA 45
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 247 GA*LKVDSSKTPSFRPWTAALYYKESLDRP 336
G L +D S TP F+P + Y K L P
Sbjct: 330 GLSLNIDISSTPFFKPISVVEYVKNCLGTP 359
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 26.2 bits (55), Expect = 9.7
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 313 SRGLRSTAGNSGSSKSLPSARHRDLMSLKS*YVAGPNDD-GRVSPSHFVAGSNHAPAATK 137
SRGLRS + GSS S P + L S S + P R + S+ V +H+ A
Sbjct: 7 SRGLRSLSKGKGSSSSAPVSAAARLFSTASVVPSIPRPQLIRATSSYTVV--DHSYDAVV 64
Query: 136 MAADGCRPTRNAMGL 92
+ A G R A+GL
Sbjct: 65 VGAGGA-GLRAAIGL 78
>05_04_0099 - 17991569-17993014
Length = 481
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 38 LCGVAPELNQCHFVPGRIQSHCVSRGSASVGRHLG 142
LCGVAPE C G CV S G LG
Sbjct: 150 LCGVAPETAGCARGGGSGDDACVVAASYGAGVALG 184
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +1
Query: 106 FAWVCIRRP-PSWSPLGR 156
FAW+C+R P P SPL R
Sbjct: 83 FAWLCLRLPLPGCSPLER 100
>02_02_0607 - 12088810-12089105,12089200-12090208
Length = 434
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 292 AGNSGSSKSLPSARHRDLMSLKS*YVAGPNDDGRVSPS 179
+ +S SS S HR ++ S Y G +D+G V P+
Sbjct: 8 SSSSSSSSSSTHHHHRHVVHHASTYFDGDDDEGDVKPA 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,269
Number of Sequences: 37544
Number of extensions: 318474
Number of successful extensions: 1180
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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