Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m16
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain fami... 47 6e-06
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 42 2e-04
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 42 2e-04
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 42 2e-04
AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain famil... 42 2e-04
AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain famil... 42 2e-04
AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain famil... 40 7e-04
Z82277-1|CAB05248.1| 648|Caenorhabditis elegans Hypothetical pr... 38 0.003
U12921-1|AAB60256.1| 648|Caenorhabditis elegans sex determinati... 38 0.003
AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical ... 36 0.008
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical pr... 28 2.2
U41272-1|AAA82446.2| 584|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical pr... 27 3.8
AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transpor... 27 3.8
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 27 6.7
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 27 6.7
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 27 6.7
AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical ... 27 6.7
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 26 8.8
>AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain family
protein 7 protein.
Length = 778
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F ++LYYK D PI W RPGEI +NPQL V SR
Sbjct: 314 PQFPANDSSLYYKTRPDEPIIWKRPGEIYENPQLIVGEKSR 354
Score = 35.5 bits (78), Expect = 0.014
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 225 DFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQ 332
+F+ R RCL + LFEDP+FPA D S + P +
Sbjct: 296 NFQQERQRCLDQRCLFEDPQFPANDSSLYYKTRPDE 331
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F ++L++ + + + WLRPGEI+ PQL EG+SR
Sbjct: 274 PQFLANDSSLFFSKRPPKRVEWLRPGEITREPQLITEGHSR 314
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 195 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEP 326
P S P T QDF ++R +CL RLFEDP+F A D S P
Sbjct: 245 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRP 289
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F ++L++ + + + WLRPGEI+ PQL EG+SR
Sbjct: 299 PQFLANDSSLFFSKRPPKRVEWLRPGEITREPQLITEGHSR 339
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 195 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEP 326
P S P T QDF ++R +CL RLFEDP+F A D S P
Sbjct: 270 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRP 314
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F ++L++ + + + WLRPGEI+ PQL EG+SR
Sbjct: 320 PQFLANDSSLFFSKRPPKRVEWLRPGEITREPQLITEGHSR 360
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 195 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEP 326
P S P T QDF ++R +CL RLFEDP+F A D S P
Sbjct: 291 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRP 335
>AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain family
protein 4, isoform b protein.
Length = 603
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F A+LYY+ I W RPGEI NPQL +G SR
Sbjct: 244 PEFPATAASLYYRTPPRDRIIWKRPGEIIANPQLITQGESR 284
Score = 34.7 bits (76), Expect = 0.025
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 225 DFKDIRSRCLAEGRLFEDPEFPAVDRS 305
DF+ R +CL LFEDPEFPA S
Sbjct: 226 DFETEREKCLRNKTLFEDPEFPATAAS 252
>AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain family
protein 4, isoform a protein.
Length = 716
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F A+LYY+ I W RPGEI NPQL +G SR
Sbjct: 244 PEFPATAASLYYRTPPRDRIIWKRPGEIIANPQLITQGESR 284
Score = 34.7 bits (76), Expect = 0.025
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 225 DFKDIRSRCLAEGRLFEDPEFPAVDRS 305
DF+ R +CL LFEDPEFPA S
Sbjct: 226 DFETEREKCLRNKTLFEDPEFPATAAS 252
>AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain family
protein 6 protein.
Length = 790
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYSR 402
P F +++YYK+ I WLRP +I NP+L V G SR
Sbjct: 161 PQFPANNSSIYYKKPPKSHIVWLRPAKIFANPRLIVNGKSR 201
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 228 FKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQAH 338
F + R +CL E RLFEDP+FPA + S + +P ++H
Sbjct: 144 FYEERQKCLDENRLFEDPQFPA-NNSSIYYKKPPKSH 179
>Z82277-1|CAB05248.1| 648|Caenorhabditis elegans Hypothetical
protein LLC1.1 protein.
Length = 648
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 286 FRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYS 399
F P +L+ ++ I W RPGE+ +P LFVEG S
Sbjct: 34 FPPTNQSLFLEQRQSSDIVWKRPGELHPDPHLFVEGAS 71
>U12921-1|AAB60256.1| 648|Caenorhabditis elegans sex determination
protein.
Length = 648
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 286 FRPWTAALYYKESLDRPITWLRPGEISDNPQLFVEGYS 399
F P +L+ ++ I W RPGE+ +P LFVEG S
Sbjct: 34 FPPTNQSLFLEQRQSSDIVWKRPGELHPDPHLFVEGAS 71
>AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical
protein Y47H10A.1 protein.
Length = 702
Score = 36.3 bits (80), Expect = 0.008
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 228 FKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEP 326
F + R +CL E RLFEDP+FPA + S ++ P
Sbjct: 202 FHEERQKCLDEKRLFEDPQFPANNSSIYVKVRP 234
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 280 PSFRPWTAALYYKESLDRPITWLRPGEISDNPQL 381
P F +++Y K I W RPGE+ NP+L
Sbjct: 219 PQFPANNSSIYVKVRPKDHIVWKRPGELFANPRL 252
>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
protein B0024.6 protein.
Length = 1161
Score = 28.7 bits (61), Expect = 1.7
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 83 GRIQSHCVSRGSASVGRHLGRRWGVVAASYKMARRNPPVIIRSGYV-SGLQRHKIAVPS* 259
GRI C G++ R L RRW +VAA RN V Y+ L+ AVP
Sbjct: 286 GRIIVPCFHEGNS---RGLHRRWMLVAA------RNGFVNDEYVYIFPSLRSRGYAVPQA 336
Query: 260 R*TLRRPRVSGRGPQP 307
T R P GPQP
Sbjct: 337 DGTFRYPWTEATGPQP 352
>Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical
protein R04D3.2 protein.
Length = 406
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 131 GRRMQTHAKRNGTVSDLAQNGTGLVPEL 48
G+R++ HA+ GTV QN TG+V L
Sbjct: 90 GQRLRAHAELGGTVLVTEQNLTGVVESL 117
>U41272-1|AAA82446.2| 584|Caenorhabditis elegans Hypothetical
protein T03G11.4 protein.
Length = 584
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 146 GDQDG-GRRMQTHAKRNG-TVSDLAQNGTGLVPELHHTNTSPQKHD 15
G Q G R+ A++ G T ++ N TGL PE+ H N P K D
Sbjct: 426 GSQHGFPRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIPGKED 471
>Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical
protein F44F1.3 protein.
Length = 646
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 222 QDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQAHHLAQTWGNQRQPSTFRR 389
+ FK I C F D EFP +S + E + + ++W P +RR
Sbjct: 42 EKFKSILEDCQRSKSAFIDKEFPHEPKSYMTFDEQSKVYGKYESWKTWLFPKIWRR 97
>AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transporter
(pgp related)protein 4 protein.
Length = 787
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 272 RRPRVSGRGPQPSTTRRAWTGPSLGSDLGKSATTLNFSSKATVA 403
+RP V+ GPQP+ + GPS G+ + +T+ + S+ + +
Sbjct: 744 KRPAVARSGPQPAASINV-AGPSQGNAMSLLSTSFSQSASSVTS 786
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical protein
B0457.1b protein.
Length = 1012
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 210 PATYQDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQAHHLAQTWGNQRQPSTF 383
P TY D+ I + G P PA R + +G G H L Q W + R P F
Sbjct: 888 PGTY-DYATIAYGDMMPGHRVAAP--PAYQRLAVAEGRYGSQHQLYQGW-HHRPPPEF 941
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical protein
B0457.1a protein.
Length = 1014
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 210 PATYQDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQAHHLAQTWGNQRQPSTF 383
P TY D+ I + G P PA R + +G G H L Q W + R P F
Sbjct: 890 PGTY-DYATIAYGDMMPGHRVAAP--PAYQRLAVAEGRYGSQHQLYQGW-HHRPPPEF 943
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 210 PATYQDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQAHHLAQTWGNQRQPSTF 383
P TY D+ I + G P PA R + +G G H L Q W + R P F
Sbjct: 888 PGTY-DYATIAYGDMMPGHRVAAP--PAYQRLAVAEGRYGSQHQLYQGW-HHRPPPEF 941
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 210 PATYQDFKDIRSRCLAEGRLFEDPEFPAVDRSPLLQGEPGQAHHLAQTWGNQRQPSTF 383
P TY D+ I + G P PA R + +G G H L Q W + R P F
Sbjct: 890 PGTY-DYATIAYGDMMPGHRVAAP--PAYQRLAVAEGRYGSQHQLYQGW-HHRPPPEF 943
>AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical
protein F36F12.6 protein.
Length = 223
Score = 26.6 bits (56), Expect = 6.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 173 CSWQQPRPSGDQ 138
C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 328 PGSPCSRGLRSTAGNSGSS 272
PG P +G R TAGN+G++
Sbjct: 144 PGHPGRKGPRGTAGNAGTA 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,892
Number of Sequences: 27780
Number of extensions: 229224
Number of successful extensions: 824
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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