Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m13
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    31   0.11 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   4.2  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   5.6  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.7  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +1

Query: 223 NPPVLLCHGKLDASSGFRPLV---SLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVIDLVP 393
           +PPVL+ HG L +   +R L    S   D   Y AID   +G S  + P + Y+ + L  
Sbjct: 20  HPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIY-AIDQRCHGDSPCVAP-LSYSAMAL-D 76

Query: 394 AVIKVREHFKWDKFIYIGHSL 456
           A   +++H K DK   IGHS+
Sbjct: 77  AFQFMKDH-KLDKASIIGHSM 96


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 250 KLDASSGFRPLVSLLPD---SFYYVAIDLPGNGRSDHLPPGVRYTVIDLV 390
           +LD +   +   +L  D   SF ++ +D+     S  +PPG+R+  ++++
Sbjct: 271 ELDTAESEKKSAALAKDNNQSFRFLELDVTEKFLSSAMPPGLRFPAVNIL 320


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 184 WGNIRGLTWGN 216
           WG+++ +TWGN
Sbjct: 213 WGSLKNITWGN 223


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 272 NPELASSFPW 243
           NPEL S+FPW
Sbjct: 13  NPELKSNFPW 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,553
Number of Sequences: 5004
Number of extensions: 42316
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)