Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m13
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0338 - 20392482-20392832,20393236-20393305,20393571-203937... 42 2e-04
12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776 41 6e-04
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268... 40 7e-04
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 36 0.012
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 36 0.016
08_02_1165 + 24830547-24831154,24832048-24832159,24832250-248324... 30 0.78
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 30 0.78
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 30 0.78
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 29 1.8
06_03_0774 + 24504964-24507459 29 2.4
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 28 3.1
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 28 4.2
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837... 27 5.5
04_04_1587 + 34630678-34632282 27 5.5
01_06_0318 - 28434817-28435197,28435333-28435461 27 5.5
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 27 5.5
11_06_0232 + 21559467-21559532,21559586-21560200 27 7.3
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 27 7.3
01_01_0150 - 1344247-1345011 27 7.3
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 27 9.6
06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423... 27 9.6
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598... 27 9.6
06_03_0778 - 24523780-24526353 27 9.6
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026... 27 9.6
04_01_0300 - 4014636-4015544 27 9.6
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 27 9.6
03_02_0922 - 12417328-12417816,12417929-12418399,12418568-124186... 27 9.6
01_01_0153 - 1352982-1353731 27 9.6
01_01_0151 - 1346942-1347682 27 9.6
>05_04_0338 -
20392482-20392832,20393236-20393305,20393571-20393790,
20394249-20394342,20394754-20394865,20395081-20395487
Length = 417
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +1
Query: 169 CVKAPWGNIRGLTWGNPSNPPVLLCHGKLDASSG-FRPLVSLLPDSFYYVAIDLPGNGRS 345
C W +R PP+LL HG AS G +R + +L +S+ AIDL G G S
Sbjct: 100 CATWTWRGMRMNYLVRGEGPPLLLVHG-FGASVGHWRRNIGVLSESYTVYAIDLLGFGAS 158
Query: 346 DHLPPGVRYTVIDLVPAVIKVREHFKWDKFIYIGHSL 456
D PPG YT+ ++ + + +G+S+
Sbjct: 159 DK-PPGFSYTMETWAELILDFLDEVVRRPTVLVGNSV 194
>12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776
Length = 320
Score = 40.7 bits (91), Expect = 6e-04
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 211 GNPSNPPVLLCHGKLDASSGFR-PLVSLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVIDL 387
G PPVLL HG + +R + +L F +A DL G G S YTV +
Sbjct: 24 GPADGPPVLLIHGFPELWLSWRHQMAALAARGFRALAPDLRGYGDSTVPDDPAAYTVFHI 83
Query: 388 VPAVIKVREHFKWDKFIYIGHSL 456
V ++ + +H K + +GH L
Sbjct: 84 VGDLVALLDHLALPKVMVVGHDL 106
>01_06_1821 +
40126389-40126508,40126589-40126646,40126782-40126837,
40127076-40127176,40127336-40127405,40127501-40127570,
40127970-40128026,40128110-40128177,40128258-40128338,
40128474-40128551,40128644-40128799,40128874-40128933,
40129253-40129317,40130002-40130059
Length = 365
Score = 40.3 bits (90), Expect = 7e-04
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 211 GNPSNPPVLLCHGKLDASSGFRPLVSLLPDSFYYVAIDLPGNGRSDHLPP--GVRYTV 378
G+ SNPPVL HG + +R ++ ++ D+++ +A D G G SD P G YT+
Sbjct: 119 GSSSNPPVLFIHGFPSQAYSYRNVLPVVSDNYHAIAFDWLGFGFSDKPQPDYGFDYTL 176
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 211 GNPSNPPVLLCHGKLDASSGFRPLVSLLPDSFY-YVAIDLPGNGRSDHLPPGVRYTVIDL 387
G P PPVLL HG +R + L D+ Y VA DL G G SD ++YT + +
Sbjct: 30 GPPGAPPVLLLHGFPQVWYAWRHQMRALADAGYRAVAPDLRGYGDSDAPAAELQYTAMHV 89
Query: 388 V 390
V
Sbjct: 90 V 90
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 232 VLLCHGKLDASSGFRPLVSLLPDSFYYVAIDLPGNGRSDHLPPGVR------YTVIDLVP 393
+L HG L S + P++ L S +A+DLPG+G S+ L V ++V +
Sbjct: 1483 ILFLHGFLGTSEDWVPMMKALSPSARVIAVDLPGHGESEILQHDVENSNQISFSVQSVAD 1542
Query: 394 AVIKVREHFKWDKFIYIGHSL 456
++K+ + + +G+S+
Sbjct: 1543 LLLKLIRNITDGAVVVVGYSM 1563
>08_02_1165 +
24830547-24831154,24832048-24832159,24832250-24832421,
24832486-24832700,24833922-24833996,24834367-24834390
Length = 401
Score = 30.3 bits (65), Expect = 0.78
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 172 VKAPWGNIRGLTWGNPSNPPVLLCHGKLDASSGFRPLVSL 291
VK W +I+ +P+NP ++LC KL G L ++
Sbjct: 356 VKRVWDHIKSNNLEDPANPTMILCDSKLKQLFGCESLTAM 395
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 298 DSFYYVAIDLPGNGRSDHLPPGVRYTVIDLVPAVIKVREHFKWDKFIYIGHSL 456
D D G GRS LP Y+ + + + + +H W K GHS+
Sbjct: 77 DGIEVCCFDNRGVGRSSVLPHKSYYSTVIMARDALALMDHLGWKKAHVFGHSM 129
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 30.3 bits (65), Expect = 0.78
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 211 GNPSNPPVLLCHGKLDASSGFRPLVSLLPDSFYY-VAIDLPGNGRSDHLPPGVRYTVIDL 387
G+ + P VL HG + +R + L Y VA DL G G + P YT+ L
Sbjct: 27 GSGTAPAVLFVHGFPELWYSWRHQMGHLAARGYRCVAPDLRGYGGTTAPPEHTSYTIFHL 86
Query: 388 VPAVIKVREHFKWDKFIYIGH 450
V ++ + + + + +GH
Sbjct: 87 VGDLVALLDALELPQVFVVGH 107
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 313 VAIDLPGNGRSDHLPPGVRYTVIDLVPAVIKVREH 417
VA D+ GRS PPG T +D++ A V H
Sbjct: 614 VACDVVPGGRSRRSPPGAAATKVDVLRAAADVPRH 648
>06_03_0774 + 24504964-24507459
Length = 831
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 196 RGLTWGNPSNPPVLLCHGKLDASSGFRPLVSLLPDSFYYV 315
R LT GN PP + D + GFR L S PDS ++
Sbjct: 32 RNLTAGNSLRPPEYITSPSGDFAFGFRALDSGGPDSLLFL 71
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 184 WGNIRGLTWGNPSNPP 231
WGN G++W +P +PP
Sbjct: 456 WGNAGGMSWPHPPHPP 471
>01_07_0298 -
42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 61 YLYGAFKVLKDSLTAHPAP 117
+ +GAFKV DS+ AHP P
Sbjct: 496 FQFGAFKVGPDSVGAHPGP 514
>05_06_0183 -
26182481-26182897,26183005-26183163,26183261-26183714,
26184370-26184485
Length = 381
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 95 ESFNTLNAPYKYIRVKSYLMNFV 27
E NT+ AP+K++ +KS ++N +
Sbjct: 190 EEVNTVVAPFKFLHLKSLMINLI 212
>04_04_1587 + 34630678-34632282
Length = 534
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +1
Query: 280 LVSLLPDSFYYVA----IDLPGNGRSDHLPPGVRYTVIDLV 390
LV +P+S + + ++L NG S LPPG+R+ + LV
Sbjct: 311 LVGSIPESLFGLQKLWNLNLSRNGLSGSLPPGIRHGLPSLV 351
>01_06_0318 - 28434817-28435197,28435333-28435461
Length = 169
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +3
Query: 246 WEAGR*FRVQTPSLPPAGFVLLRGHRLTREWQIRSPAPGRQIYR 377
W G R P++ A LR HR EW+ R YR
Sbjct: 14 WLQGSSIRSLAPAIYAAVPARLRNHRTVAEWETSGEYSSRSAYR 57
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 27.5 bits (58), Expect = 5.5
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 211 GNPSNPPVLLCHGKLDASSGFR-PLVSLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVIDL 387
G P LL HG + +R + +L F VA DL G G SD YTV+ L
Sbjct: 25 GPEGGPVALLVHGFPELWYSWRHQMRALAARGFRAVAPDLRGYGDSDAPQGRDSYTVLHL 84
Query: 388 VPAVIKVREHFKWDKFIYIGH 450
V ++ + + GH
Sbjct: 85 VGDLVALIADLGRPQVFVAGH 105
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 280 LVSLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVIDLVP 393
+ SL+PD++Y + + LPG +L P + ++ LVP
Sbjct: 1 MCSLVPDTWYLIPVTLPGTW---YLVPVDTWYLVPLVP 35
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 274 RPLVSLLPDSFYYVAIDLPGNGRSDHLPPG 363
RPL +LPD + I LP G+ P G
Sbjct: 452 RPLPDVLPDGIWAEGISLPSTGQFAENPTG 481
>01_01_0150 - 1344247-1345011
Length = 254
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 169 CVKAPWGNIRGLTWGNPSNPPVLLCHGKLDASSG 270
C PWG+ T S PP+ C K+ A G
Sbjct: 184 CTPRPWGDCCDNTTCTKSIPPICSCGDKVAACDG 217
>08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 267 RVQTPSLPPAGFVLLRGHRLTR-EWQIRSPAPGRQIYRDRSRTGRNKSEGA 416
R + L P+GFVLLR + T E + + AP Q + T + GA
Sbjct: 918 RYEPVKLAPSGFVLLRDLKPTETEELVLTDAPATQATNAAAATAGQQGSGA 968
>06_03_1068 -
27341103-27341444,27341689-27341929,27342030-27342343,
27342672-27343805
Length = 676
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 PWGNIRGLTWGNPSNPPVLLCHGKLDA 261
P G RGLTW P + P L+ +L A
Sbjct: 499 PRGQARGLTWFIPMDDPTLISRQQLFA 525
>06_03_0792 +
24658324-24658763,24659167-24659387,24659765-24659827,
24659849-24660102
Length = 325
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = +1
Query: 214 NPSNPPVLLCHGKLDASSGFRPLVSLL 294
NP P V LCH K DA PLVSLL
Sbjct: 226 NPDAPTVYLCH-KPDAKETL-PLVSLL 250
>06_03_0778 - 24523780-24526353
Length = 857
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 202 LTWGNPSNPPVLLCHGKLDASSGFRPLVSLLPDSFYYVAI 321
LT G+ PP + D + GFR L S PD ++ +A+
Sbjct: 30 LTAGSTLRPPHYITSPSGDFAFGFRALGSGRPDGWFLLAV 69
>05_06_0185 -
26201013-26201429,26201537-26201695,26201774-26202601,
26203483-26203605
Length = 508
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 95 ESFNTLNAPYKYIRVKSYLMNFV 27
E FNT+ AP+K++ +KS ++ +
Sbjct: 317 EKFNTVVAPFKFLHLKSLKISLI 339
>04_01_0300 - 4014636-4015544
Length = 302
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 305 NESGR-RETRGLNPELASSFPWQSNTGGFEGLPHVNPLMLP 186
+ SGR RE + P L+SSF Q+N LP N L P
Sbjct: 16 SRSGRSREPSKVRPPLSSSFTSQNNPASDTLLPSPNRLASP 56
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 184 WGNIRGLTWGNPSNPPVLLCH 246
W I+ L+ GN +NP VLL H
Sbjct: 220 WEFIKALSPGNKTNPKVLLTH 240
>03_02_0922 -
12417328-12417816,12417929-12418399,12418568-12418663,
12418746-12418927,12419027-12419486
Length = 565
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 186 G*HQRIDMG*PFEPASIALPWEAG 257
G H R+ G P+ PA++ PW+ G
Sbjct: 89 GGHVRVVRGRPWPPAAVPDPWQRG 112
>01_01_0153 - 1352982-1353731
Length = 249
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +1
Query: 109 PAPRNLIRKRAMARLNEKEICVKAPWGNIRGLTWGNPSNPPVLLC 243
P P LI + + C PWG+ + N NPP C
Sbjct: 160 PFPGKLICEDIYWGADPGPFCTPRPWGDCCDKAFCNKMNPPTCRC 204
>01_01_0151 - 1346942-1347682
Length = 246
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +1
Query: 109 PAPRNLIRKRAMARLNEKEICVKAPWGNIRGLTWGNPSNPPVLLC 243
P P LI + + +C PWG + N NPP C
Sbjct: 157 PFPGPLICEDVYWGADPGPLCTPRPWGKCCDKAFCNKMNPPTCRC 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,658,232
Number of Sequences: 37544
Number of extensions: 322836
Number of successful extensions: 715
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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