Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m13
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    32   0.23 
Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U88315-14|AAB42366.2|  355|Caenorhabditis elegans Hypothetical p...    27   6.6  
AL110477-10|CAB54334.1|  328|Caenorhabditis elegans Hypothetical...    27   6.6  
AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical...    27   8.7  
AF067942-3|AAL11486.1|  351|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF067942-2|AAG45574.1|  403|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +1

Query: 211 GNPSNPPVLLCHGKLDASSGFRPLVSLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVIDLV 390
           G+   P +L  HG  +    +R  +    D +  VAID  G   SD       Y++ +L 
Sbjct: 135 GSDDKPLMLFIHGYPEFWYSWRFQLKEFADKYRCVAIDQRGYNLSDKPKHVDNYSIDELT 194

Query: 391 PAVIKVREHFKWDKFIYIGH 450
             +  V E   +DK I + H
Sbjct: 195 GDIRDVIEGLGYDKAIVVAH 214


>Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical
           protein R05D7.4 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 223 NPPVLLCHGKLDASSGFRPLVSLLPDSFY--YVAIDLPGNGRSDHLPPGVRYTVI--DLV 390
           N P+++ HG       +  +   L         A+D+  +G S H    + YT +  DLV
Sbjct: 45  NSPLVIVHGLFGQKQNWNSVGKALHKKLEAPVYAVDVRNHGSSPHTET-MSYTEMAEDLV 103

Query: 391 PAVIKVREHFKWDKFIYIGHSL 456
             + KV+E  K  +   +GHS+
Sbjct: 104 LFIDKVKEETKKTRVNLLGHSM 125


>U88315-14|AAB42366.2|  355|Caenorhabditis elegans Hypothetical
           protein C37H5.2 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 220 SNPPVLLCHGKLDASSGFRPLVSLLPDSFYYVAIDLPGNGRSDH--LPPGVRYTVIDLVP 393
           S  P++L HG     + +   +  L       AIDLPG GRS              +++ 
Sbjct: 70  SKYPIVLIHGFGAGVALWGSAIKRLAQFQNVYAIDLPGFGRSSRTKFSTDPETAEKEMIE 129

Query: 394 AVIKVREHFKWDKFIYIGHS 453
           A+ + R     +K   +GHS
Sbjct: 130 AIEQWRVKMNLEKMNLVGHS 149


>AL110477-10|CAB54334.1|  328|Caenorhabditis elegans Hypothetical
           protein Y113G7B.15 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 100 TAHPAPRNLIRKRAMARLNEKEICVKAPWGNIRGLTWGNPSNPPVLLCHGKLDASSGFRP 279
           TA     N +  ++   L+++EIC  A  G+  G   G+P N  + + H +  +S G  P
Sbjct: 132 TAITEAANTLYSKSFTSLSDQEICDCADSGDTPGCVGGDPRN-GLKMVHLRGQSSDGDYP 190


>AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical
           protein Y39A1A.23 protein.
          Length = 497

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 255 QLPMAEQYWRVRRVTPCQSSDVTP 184
           ++P+AEQ WR R VT  +  + +P
Sbjct: 353 EIPVAEQSWRDREVTVYEQREPSP 376


>AF067942-3|AAL11486.1|  351|Caenorhabditis elegans Hypothetical
           protein ZK6.7b protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 175 KAPWGNIRGLTWGNPSNPPVLLCHGKLDASSGFRPLVSLLPD 300
           + P+G    +TW N   P V + HG L ASS +   V  LPD
Sbjct: 57  RIPFGKTN-VTWPNGKRPVVFMQHGLLCASSDW---VVNLPD 94


>AF067942-2|AAG45574.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK6.7a protein.
          Length = 403

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 175 KAPWGNIRGLTWGNPSNPPVLLCHGKLDASSGFRPLVSLLPD 300
           + P+G    +TW N   P V + HG L ASS +   V  LPD
Sbjct: 57  RIPFGKTN-VTWPNGKRPVVFMQHGLLCASSDW---VVNLPD 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,439
Number of Sequences: 27780
Number of extensions: 243564
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)