Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m11
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 36 0.004
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 33 0.037
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 31 0.085
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.34
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 29 0.60
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 0.60
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.4
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.2
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 3.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 3.2
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 3.2
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 4.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.2
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 5.6
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 25 5.6
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.8
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 9.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 9.8
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 9.8
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.8
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +1
Query: 82 PEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
P + D E ++LE D S+L+ L+R+N+++ +QLK + NI++++++ E
Sbjct: 627 PAKHSRVDRYEHPKVLEDN-DSTISSLESLKRENEELREQLKVEHEENISMQKQLSELKG 685
Query: 262 EVN 270
E+N
Sbjct: 686 ELN 688
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 32.7 bits (71), Expect = 0.037
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Frame = +1
Query: 76 EPPEDDNNEDITEEYEL--LESTLDELNSALD----FLERKNDDI---HQQLKELLQSNI 228
E ED +N+++ EYE+ L++ LDEL+ LD L K D+I +Q++E S+
Sbjct: 271 EMEEDKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSS 330
Query: 229 AIRQE 243
A E
Sbjct: 331 AFENE 335
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 31.5 bits (68), Expect = 0.085
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 94 NNEDITE-EYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVN 270
NNE + E E+L + +DELNS LE + + + L + ++++E ++++
Sbjct: 20 NNEGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKIS 79
Query: 271 NS 276
N+
Sbjct: 80 NN 81
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +1
Query: 100 EDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNN 273
+D EE+ L LD++ + + KN D+ +L++ N ++ + +NK++ N
Sbjct: 701 KDFIEEHSKLTKQLDDIKNQFGIISSKNRDLLSELEKSKSLNNSL-AALESKNKKLEN 757
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +1
Query: 103 DITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNN 273
+ TE+ + + + LER+ DD+ Q+L+E+ ++ E+ E ++ + +
Sbjct: 104 ETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDKYTKVKAELDEVHQALED 160
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/61 (19%), Positives = 33/61 (54%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN*RNA 291
E+ + +++++E+ + L+ + + + Q+K LL+ N ++++ + + N NA
Sbjct: 308 EKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNA 367
Query: 292 N 294
N
Sbjct: 368 N 368
Score = 28.7 bits (61), Expect = 0.60
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 148 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN 279
L S + E + +H L+ L Q+N +++ E+ E+N E+N+ N
Sbjct: 520 LKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 97 NEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNN 273
N D+ E E L+ + L L+ + + K L + N EM+E +++NN
Sbjct: 324 NRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNN 382
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 173 SVKMMIFTNN*KSFCNPILQLDKKCVKKIRKSTTVIEEMQIQHYFKFNCA 322
S+ +M+ + FC+ + K V K+RK+ ++ ++ +H+ F+ A
Sbjct: 103 SIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAA 152
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 94 NNEDITEEYELLESTLDELNSALDFLER-KNDDIHQQLK 207
NNE + E + L+ + E+ +++ K DD+H+QLK
Sbjct: 911 NNEGLVTEIKTLQDKIMEIGGIRYRIQKSKVDDLHEQLK 949
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 91 DNNEDITEEYELLEST---LDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
D+ E++ + LE +DELNSA L ++ ++ +L + N +++++
Sbjct: 482 DSQEELLQLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYEN 541
Query: 262 EVNN 273
EVN+
Sbjct: 542 EVNS 545
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 106 ITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIA-IRQEMREENKEVNNSN* 282
+ EE E L+ +++ N+ L ++ + LK+ + A ++QE+ +NKE+ + N
Sbjct: 1392 LNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNA 1451
Query: 283 RN 288
N
Sbjct: 1452 EN 1453
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 121 ELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQE 243
EL +S + + A + ++ H+Q K L++S I+ R+E
Sbjct: 963 ELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREE 1003
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 109 TEEYE-LLESTLDELNSALDFLERKNDDIHQQLKE 210
T+ YE L+ +LD +++ F+++ DDI + LKE
Sbjct: 844 TKLYERALQQSLDTISANSSFIDKSLDDITRWLKE 878
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 100 EDITEEYELLESTLDELNSALDFLERKN---DDIHQQLKELLQSNIAIRQEMRE 252
E TEE EL + +N+ FL+++N D + + EL + N A E+ +
Sbjct: 2 EKDTEELELENAVFGNINNFSSFLDKENETFDVMMNEAPELSEDNDAQEDELEK 55
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 127 LESTLDELNSALDFLERKNDDIHQQLKE 210
L T ELNSALD +++ +IH +LKE
Sbjct: 1346 LVDTRKELNSALDSCKKREAEIH-RLKE 1372
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 392 YHLSIFSDQYHKVSVSF--K*CIIIHLRYLSMNNYLSCLHHLNVISCIFMSIGMN 550
Y++S Y+ + + F + +++HL +++ HH+ + I +S G N
Sbjct: 195 YYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHWQMFAHHIVTCALIILSYGFN 249
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 172 ERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN 279
+R+N Q +++L +SN+ + + E K +NSN
Sbjct: 550 KRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 73 IEPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 210
I PP NN+ T++ LLES N + L D++++ E
Sbjct: 160 IRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSE 205
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 148 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNN 273
+++ L+ LE DD + +LKE NIA +QE+ E+++
Sbjct: 433 VDAYLNPLEFNFDDKNVKLKEFGSPNIAYKQELNSFQGELSS 474
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 115 EYELLESTLDELNSALDFLERKNDDIHQ 198
EYEL S ++E S + L +N D HQ
Sbjct: 230 EYELYLSKMEEAKSTIYLLLDRNPDNHQ 257
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +1
Query: 85 EDDNNEDITEEYELLEST---LDELNSALDFLER-KN--DDIHQQLKELLQSNIA-IRQE 243
++ N++ + EE E+ S+ LD + + + KN +D H+ K S+I +
Sbjct: 129 DEGNSKPLLEEGEVAVSSPILLDSKDVIMGVTKSSKNLVEDAHKSKKASTNSSINNMVST 188
Query: 244 MREENKEVNNSN*RNANTA 300
+ EN VNN + N NT+
Sbjct: 189 VNSENSNVNNGSSLNGNTS 207
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 9.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDF-LE--RKNDDIHQQLKELLQS 222
EEYE L S D+LNS L F L+ +N + Q K+ L S
Sbjct: 381 EEYEGLRSEADKLNSNLLFKLQTLNRNIKVTSQSKDSLTS 420
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 172 ERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN*RNA 291
E +D + QQL E ++ A E+R ++++V N RNA
Sbjct: 163 ENADDSLIQQLYERIELQAA---ELRSKDEQVKELNARNA 199
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +2
Query: 185 MIFTNN*KSFCNPILQLDKK-CV--KKIRKSTTVIEEM 289
++ ++N K+F NP++ L +K CV +K+ TV ++M
Sbjct: 202 LLHSSNLKAFINPLIPLTQKFCVQLQKLFADLTVSDQM 239
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 88 DDNNEDITEEYELLESTLDELNSALDFLERK 180
DD + DI E+ + LES ++ L D L +K
Sbjct: 109 DDYSLDIAEKLKKLESHIEALRKVYDDLYKK 139
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 94 NNEDITEEYELLESTLDELNSALDFLER 177
+NE EY + DE+NS LD LE+
Sbjct: 217 DNERRCLEYAIYSREHDEINSVLDALEQ 244
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNN 273
++++L + +D+L D LE+ ++ ++ + L QSN + + + EE ++ N
Sbjct: 1127 KQHDLCANFVDDLKEKSDALEQLTNEKNELIVSLEQSN-SNNEALVEERSDLAN 1179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,521
Number of Sequences: 5004
Number of extensions: 33518
Number of successful extensions: 155
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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