Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m11
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 36 0.019
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 34 0.078
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.55
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 31 0.55
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 31 0.55
AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical ... 31 0.55
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 1.7
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 1.7
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 29 2.2
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 29 2.2
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 29 2.2
AF077542-4|AAU20829.1| 315|Caenorhabditis elegans Serpentine re... 29 2.2
U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical p... 29 2.9
U40029-8|AAA81128.2| 275|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97191-7|AAB52429.1| 241|Caenorhabditis elegans Hypothetical pr... 28 3.9
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 3.9
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 3.9
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 3.9
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 3.9
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 28 5.1
Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical p... 28 5.1
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 28 5.1
U13070-7|AAC46638.1| 414|Caenorhabditis elegans Rabaptin (rab e... 28 5.1
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 28 5.1
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 28 5.1
AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical ... 28 5.1
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 28 5.1
AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical ... 28 5.1
AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical ... 28 5.1
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 27 6.8
CU457737-8|CAM36329.1| 811|Caenorhabditis elegans Hypothetical ... 27 6.8
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 27 6.8
Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical pr... 27 9.0
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 27 9.0
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 27 9.0
AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical ... 27 9.0
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
protein C50C3.2 protein.
Length = 2107
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +1
Query: 76 EPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 255
E PED N EDI +E +++ S ++ +E D++ Q+ ++L Q ++ +++ +
Sbjct: 416 ESPEDMNAEDIEKEIRVIDGITVRCTSVVEQIENIEDELRQKPEQLNQLSVYASKQVNDL 475
Query: 256 NK 261
N+
Sbjct: 476 NE 477
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 33.9 bits (74), Expect = 0.078
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 255
E+D + + LESTLDEL L+ +R D +Q ++ ++ + I QE+ EE
Sbjct: 1023 EEDKVNHLNKTKAKLESTLDELEDTLEREKRGRQDCEKQRRK-VEGELKIAQELIEE 1078
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 127 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 127 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 127 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 127 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 134 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 178
>AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical
protein ZC132.6 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 100 EDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 252
E + +Y EST++ LN L + KND I Q KEL ++ + I ++R+
Sbjct: 144 EALKNKYTNSESTINSLNEKLLKEKSKNDSIQAQ-KELYENLVIIIDQLRQ 193
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 88 DDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 210
++ NE + + LES L ++ L+ ++ +N+D+ +Q K+
Sbjct: 915 EERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKK 955
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKE 264
E E+ + LES +++L ALD R D + +K+ +++ ++ ++ EE ++
Sbjct: 1617 ETKQKEEALRIKKKLESDINDLEIALDHANRAYADAQKTIKKYMETVQELQFQIEEEQRQ 1676
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 255
E+D + + LE +DEL +D +R DI ++ K ++ ++ + QE +E
Sbjct: 1026 EEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDI-EKAKRKVEGDLKVAQENIDE 1081
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 88 DDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 210
++ NE + + LES L ++ L+ ++ +N+D+ +Q K+
Sbjct: 915 EERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKK 955
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKE 264
E E+ + LES +++L ALD R D + +K+ +++ ++ ++ EE ++
Sbjct: 1617 ETKQKEEALRIKKKLESDINDLEIALDHANRAYADAQKTIKKYMETVQELQFQIEEEQRQ 1676
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 255
E+D + + LE +DEL +D +R DI ++ K ++ ++ + QE +E
Sbjct: 1026 EEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDI-EKAKRKVEGDLKVAQENIDE 1081
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREEN 258
E+D + LE TLD+L +L+ +R D+ +Q K ++ + I QE +E+
Sbjct: 1022 EEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQ-KRKVEGELKIAQENIDES 1078
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREEN 258
E+D + LE TLD+L +L+ +R D+ +Q K ++ + I QE +E+
Sbjct: 1022 EEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQ-KRKVEGELKIAQENIDES 1078
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREEN 258
E+D + LE TLD+L +L+ +R D+ +Q K ++ + I QE +E+
Sbjct: 1025 EEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQ-KRKVEGELKIAQENIDES 1081
>AF077542-4|AAU20829.1| 315|Caenorhabditis elegans Serpentine
receptor, class z protein63 protein.
Length = 315
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 294 ICISSITVVDFLIFFTHFLSNCNIGLQKLFQLLVNIIIFTL 172
+ I +T+V FL++F C++ +Q F + ++ TL
Sbjct: 110 VLIMMMTLVKFLVYFFPSTEKCSLSVQSFFHKNLKLVYLTL 150
>U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical
protein C33G8.3 protein.
Length = 142
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +1
Query: 82 PEDDNNEDITEEYELLEST-LDELNSALDF-LERKNDDIHQQLKELLQSNIAIRQEMRE- 252
P +++N D+ + +E LD + A D LE+K D+I +++ E ++ I +E RE
Sbjct: 19 PLNEDNVDLESDVAEMEGAELDRVKRASDHKLEKKLDEIMEKV-EKIKDKIEENKEKREK 77
Query: 253 ENKEVNN 273
+NK+ N
Sbjct: 78 KNKKKGN 84
>U40029-8|AAA81128.2| 275|Caenorhabditis elegans Hypothetical
protein F10G7.3 protein.
Length = 275
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 76 EPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDD 189
E +DD E EE +L ES + L +ALD E+K D
Sbjct: 191 EEEDDDEMEANAEEVDLNESFNERLANALDGAEQKGAD 228
>U97191-7|AAB52429.1| 241|Caenorhabditis elegans Hypothetical
protein F53F10.1 protein.
Length = 241
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 73 IEPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQS 222
+E + D NE++ E E L+ +ELN + +E I Q L+ +QS
Sbjct: 176 VETTKSDINEELKAENEFLKDQANELNKCREKIETDGKTI-QDLRLRIQS 224
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN 279
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V++ N
Sbjct: 704 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 759
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN 279
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V++ N
Sbjct: 704 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 759
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN 279
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V++ N
Sbjct: 464 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 519
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 112 EEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVNNSN 279
E+YE L+ L+E+N ER+ D+ L +L + + E++++ V++ N
Sbjct: 704 EKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLTNELKQKGVTVDSLN 759
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 127 LESTLDELNSALDFLE-----RKNDDIHQQLKELLQSNIAIRQEMREENKEVN 270
LE +D L + LD + RK D I+Q++KEL + + E+ KEV+
Sbjct: 541 LEQQVDNLRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVD 593
>Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 127 LESTLDELNSALDFLE-----RKNDDIHQQLKELLQSNIAIRQEMREENKEVN 270
LE +D L + LD + RK D I+Q++KEL + + E+ KEV+
Sbjct: 541 LEQQVDNLRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVD 593
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 76 EPPEDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 255
E ED+ + + +E ++T DE + DF + K+DD L++ I E E+
Sbjct: 78 ELEEDEEVQPLKKEKISKKTTKDEDDELDDFFDEKDDD-EDALEDADDEEDEISDEENED 136
Query: 256 NKEVNN 273
+E N
Sbjct: 137 EEEEEN 142
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +1
Query: 79 PPEDDNNEDITEEYELLESTLDELNSALDFLERK----NDDIHQQLKELLQSNI 228
PP+ D++ I E ELL++ + ++L+ + K + DI+Q+L E L ++
Sbjct: 255 PPKIDSHAKIQAERELLDALKGSIEASLELKDLKKTASSKDIYQRLYERLPCHL 308
>U13070-7|AAC46638.1| 414|Caenorhabditis elegans Rabaptin (rab
effector) protein 5 protein.
Length = 414
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 127 LESTLDELNSALDFLERKNDD---IHQQLKELLQSNIAIRQEMREE 255
+E D+LN A D L++ +DD + ++ K+LL S QE+R E
Sbjct: 125 IEVFTDQLNLARDKLQQADDDFVTLGKKYKKLLGSTRKSAQELRSE 170
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 255
EDD+N+D ++ E E +E + A D E ++D+ ++++KE + + + ++ E
Sbjct: 49 EDDDNDDDEDDDEEEEDEDEEEDEAED--EAEDDEENEEVKEEKEDEEVVEERVKVE 103
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 127 LESTLDELNSALDFLE-----RKNDDIHQQLKELLQSNIAIRQEMREENKEVN 270
LE +D L + LD + RK D I+Q++KEL + + E+ KEV+
Sbjct: 541 LEQQVDNLRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVD 593
>AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 127 LESTLDELNSALDFLE-----RKNDDIHQQLKELLQSNIAIRQEMREENKEVN 270
LE +D L + LD + RK D I+Q++KEL + + E+ KEV+
Sbjct: 541 LEQQVDNLRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVD 593
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +1
Query: 79 PPEDDNNEDITEEYELLESTLDELNSALDFLERK----NDDIHQQLKELLQSNI 228
PP+ D++ I E ELL++ + ++L+ + K + DI+Q+L E L ++
Sbjct: 255 PPKIDSHAKIQAERELLDALKGSIEASLELKDLKKTASSKDIYQRLYERLPCHL 308
>AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical
protein T28C12.4b protein.
Length = 578
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 124 LLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
LL T E+NSA+D L RKN +++ + + +R ++K
Sbjct: 347 LLRGTEKEINSAIDVLSRKNRLSRSKIEAMTEKVYGDSPALRADSK 392
>AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical
protein T28C12.4a protein.
Length = 658
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 124 LLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 261
LL T E+NSA+D L RKN +++ + + +R ++K
Sbjct: 427 LLRGTEKEINSAIDVLSRKNRLSRSKIEAMTEKVYGDSPALRADSK 472
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
gene nameprotein 278 protein.
Length = 1130
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 88 DDNNEDIT--EEYELLESTLDELNSALDFLERKNDDIHQQLKE---LLQSNIAIRQEMRE 252
+ +NE +T E LE+ L E L + K DD+ QQL E ++ + +I++++ E
Sbjct: 820 EKDNEVLTKAERINELETCLKEREVELTGMRTKLDDMTQQLNEETTVVLFDNSIQEKIDE 879
Query: 253 ENKEVNNSN*R 285
+ +N N R
Sbjct: 880 KEATINEMNER 890
>CU457737-8|CAM36329.1| 811|Caenorhabditis elegans Hypothetical
protein C52D10.12 protein.
Length = 811
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 303 ILNLIVQIYMLPSVICLSQKCKIEIVNLNIT---IYQY 407
++ I ++MLP L+ K +EIV + T +YQY
Sbjct: 393 VMTKIEDVFMLPDTTVLNAKTVMEIVKMGYTRIPVYQY 430
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 328 YICTIKFKIVLYLHFFNYCC*L-PYFL 251
+I I+F I Y+H F+Y C L YFL
Sbjct: 30 FIFLIQFVIFTYIHIFSYLCVLFNYFL 56
>Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical
protein C33D9.6 protein.
Length = 485
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +1
Query: 76 EPPEDDNNEDITEEYELLESTLD-ELNSALDFLERKNDDIH-QQLKELLQS-NIAIRQEM 246
EP DD+ I+ LE ++ L+ K +I+ +Q++ L++ N I+ +
Sbjct: 255 EPSTDDSTIKISMAQHRLELEAQAKMIKTLEAELSKRQEINAEQIERLIEERNSEIKNLI 314
Query: 247 REENKEVNNSN 279
RE++KE++ N
Sbjct: 315 REQSKEIHEKN 325
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 210
+DD ++D E +++++ +L A+D ++R + D + +E
Sbjct: 776 DDDEDDDEEAEIQIIDNGESQLKLAMDRIDRLDIDFESRFQE 817
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +1
Query: 85 EDDNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKE 210
+DD ++D E +++++ +L A+D ++R + D + +E
Sbjct: 813 DDDEDDDEEAEIQIIDNGESQLKLAMDRIDRLDIDFESRFQE 854
>AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical
protein Y32B12B.2 protein.
Length = 789
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 91 DNNEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKEVN 270
D ED + ES DEL+ LER++D H++ ++ + I E EE + +
Sbjct: 627 DEEEDYDNTEIVYESEEDELDGLEAKLERESDRRHKKWEKKNKVMIDSDDEEEEEENDDD 686
Query: 271 NSN 279
N
Sbjct: 687 KEN 689
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,914,587
Number of Sequences: 27780
Number of extensions: 187231
Number of successful extensions: 890
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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