Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m10
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   141   4e-35
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   137   7e-34
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   0.80 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.1  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   2.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   5.6  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.8  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    24   9.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    24   9.8  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  141 bits (342), Expect = 4e-35
 Identities = 71/144 (49%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
 Frame = +2

Query: 35  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
           MGIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 215 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 388
           IS+S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 389 EILTFDQLALRAPTGKKTVLVQGQ 460
           E+LT DQLALRAPTG  TVL++G+
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGK 144


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  137 bits (332), Expect = 7e-34
 Identities = 68/144 (47%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
 Frame = +2

Query: 35  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
           MGIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 215 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 388
           IS+S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 389 EILTFDQLALRAPTGKKTVLVQGQ 460
           E+LT DQLALRAPTG  TVLV+G+
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGK 144


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 299 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 412
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 400 SKNFSSSSQNACTSFFGNMKSSHRH 326
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 397 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 284
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 266 LIAVVVGTVTNDVRLYKI 319
           L+ +VV  +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -3

Query: 439 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTL 260
           L+A  ST S   K     S  +     F    K S    RYL Q   IC+ P  +   +L
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112

Query: 259 T 257
           +
Sbjct: 113 S 113


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 433 ASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTS 254
           +S ST S  + S + SSSS+ A +S   +  SSH+       S        YH + +  S
Sbjct: 374 SSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRS 432


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -3

Query: 364 TSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHVARQTRHRDWWPVDTAHK 188
           T F+GN  S   HL Y    H+I    H    +T+ S+  H+ ++    D   ++   K
Sbjct: 287 THFYGNALSIIEHLIYQKDFHLISPL-HLTTLRTVPSFQRHIEQRLEIGDLESINYVEK 344


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 286 PHYHGNQTLTSWLLHVARQTRHRDWWPVDTAH 191
           P YH    +   L+H+    R  +W P    H
Sbjct: 220 PTYHFANVVDDHLMHITHVIRGEEWVPSTIKH 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,077
Number of Sequences: 5004
Number of extensions: 41571
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)