Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m10
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 138 3e-33
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 136 6e-33
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 133 8e-32
01_06_0579 + 30379243-30379617 29 1.4
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 1.8
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 2.4
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 3.2
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 5.6
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 27 7.3
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 7.3
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 7.3
02_05_0718 + 31203358-31203717,31203826-31204011 27 7.3
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 9.7
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 138 bits (333), Expect = 3e-33
Identities = 74/148 (50%), Positives = 98/148 (66%), Gaps = 7/148 (4%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 212 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 373
P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 374 LAAGGEILTFDQLALRAPTGKKTVLVQG 457
+ AGGE LTFDQLALRAP G+ TVL++G
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRG 148
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 136 bits (330), Expect = 6e-33
Identities = 72/142 (50%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 212 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 391
P+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 392 ILTFDQLALRAPTGKKTVLVQG 457
LTFDQLALRAP G+ TVL++G
Sbjct: 120 CLTFDQLALRAPLGENTVLLRG 141
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 133 bits (321), Expect = 8e-32
Identities = 70/139 (50%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 212 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 391
P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 392 ILTFDQLALRAPTGKKTVL 448
LTFDQLALRAP G+ T +
Sbjct: 119 CLTFDQLALRAPLGQNTYI 137
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 314 CTVSRHL*LSPLPRQSNPHELASS 243
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 285 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 181
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 2.4
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 152 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 328
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 329 TVAALHVTEKARARILAAGGEI 394
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 382 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 284
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 278 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 418
++G++ DV I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 387 PPAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 256
P + RAR+ S+T A +V F + T TTTA K R
Sbjct: 293 PRPSHRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIR 336
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 267 KPSRVGFFMWRAKRDTEIG 211
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 175 STPALYEPYQPATNLCV-SFGAPHEEANS 258
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 262 GFDCRGSGDSHK*RETVQDTEDDGGCSSCYRK 357
G D GSGD K R D +DDG Y+K
Sbjct: 122 GDDDDGSGDERKPRYKKHDDDDDGERKPRYKK 153
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 304 ETVQDTEDDGGCSSCYRKSS 363
E VQ +DD G S C R+SS
Sbjct: 253 ENVQSDDDDSGPSQCMRESS 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,506
Number of Sequences: 37544
Number of extensions: 293565
Number of successful extensions: 798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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