Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m10
(462 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 167 2e-41
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 167 2e-41
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 167 2e-41
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 167 2e-41
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 165 9e-41
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 138 1e-32
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 3.4
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 3.4
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 3.4
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 29 5.9
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 29 5.9
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 167 bits (405), Expect = 2e-41
Identities = 83/141 (58%), Positives = 101/141 (71%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 394
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 395 LTFDQLALRAPTGKKTVLVQG 457
LTFDQLAL +P G TVL+ G
Sbjct: 121 LTFDQLALDSPKGCGTVLLSG 141
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 167 bits (405), Expect = 2e-41
Identities = 83/141 (58%), Positives = 101/141 (71%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 394
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 395 LTFDQLALRAPTGKKTVLVQG 457
LTFDQLAL +P G TVL+ G
Sbjct: 121 LTFDQLALDSPKGCGTVLLSG 141
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 167 bits (405), Expect = 2e-41
Identities = 83/141 (58%), Positives = 101/141 (71%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 394
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 395 LTFDQLALRAPTGKKTVLVQG 457
LTFDQLAL +P G TVL+ G
Sbjct: 121 LTFDQLALDSPKGCGTVLLSG 141
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 167 bits (405), Expect = 2e-41
Identities = 83/141 (58%), Positives = 101/141 (71%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 394
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 395 LTFDQLALRAPTGKKTVLVQG 457
LTFDQLAL +P G TVL+ G
Sbjct: 121 LTFDQLALDSPKGCGTVLLSG 141
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 165 bits (400), Expect = 9e-41
Identities = 82/141 (58%), Positives = 100/141 (70%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 215 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 394
+ +SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 395 LTFDQLALRAPTGKKTVLVQG 457
LTFDQLAL +P G TVL+ G
Sbjct: 121 LTFDQLALDSPKGCGTVLLSG 141
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 138 bits (333), Expect = 1e-32
Identities = 66/103 (64%), Positives = 83/103 (80%)
Frame = +2
Query: 149 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 328
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 329 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQG 457
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSG 118
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 361 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 239
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 361 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 239
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 361 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 239
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +1
Query: 271 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 450
CR SG S R CS +S T CW + F +SCS W ++
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCWSSGTSS 85
Query: 451 T 453
T
Sbjct: 86 T 86
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +1
Query: 271 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 450
CR SG S R CS +S T CW + F +SCS W ++
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCWSSGTSS 85
Query: 451 T 453
T
Sbjct: 86 T 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,924,231
Number of Sequences: 237096
Number of extensions: 1609558
Number of successful extensions: 3175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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