Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m10
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   156   8e-39
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    31   0.53 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    31   0.53 
AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical...    27   8.6  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  156 bits (378), Expect = 8e-39
 Identities = 79/141 (56%), Positives = 98/141 (69%)
 Frame = +2

Query: 35  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
           MGIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 215 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 394
           +S+++LAR ++K   E    V + TVT+D RLY +PK++VAALHVTE ARARILAAGGEI
Sbjct: 61  LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEI 120

Query: 395 LTFDQLALRAPTGKKTVLVQG 457
           +T DQLAL++P G+ TV +QG
Sbjct: 121 ITLDQLALKSPKGENTVFLQG 141


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 160 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 327
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 160 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 327
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256


>AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical
           protein C50H11.17 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 199 YQPATNLCVSFGAPHEEANS*GFDCRGSGDSH 294
           Y+ A NLC++   P E+ANS  F C   G  H
Sbjct: 229 YEDAFNLCLNEVKPREDANS--FPCFIDGRFH 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,722
Number of Sequences: 27780
Number of extensions: 247101
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)