Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28m04
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 29 2.4
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 29 2.4
01_06_1022 + 33887089-33888411 29 3.2
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 29 4.3
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 28 5.6
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 28 5.6
08_02_0648 - 19694538-19696569,19697151-19697998 27 9.9
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 27 9.9
02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941 27 9.9
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 318 IPVELMEISKAMA--PMTKEEWEKKQSIIRRVLDE 416
IP+ ++ IS ++ P+ KEEWEK + I VLD+
Sbjct: 372 IPLAIISISGLLSNRPIIKEEWEKVKESIGFVLDK 406
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +3
Query: 306 VSADIPVELMEISKAMAPMTKEEWEKKQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKER 485
VSAD P + + E K S+ R LDE + R + G++LE S
Sbjct: 172 VSADPPTRQSTSAASSLSAKMYEERVKNSVQRDTLDEAPAKQRFTENIGQLLES-NSSSM 230
Query: 486 HKEINRQATQADGALFQAQT 545
K + A QA G +F T
Sbjct: 231 LKSVAITA-QASGQIFHGST 249
>01_06_1022 + 33887089-33888411
Length = 440
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -3
Query: 523 PSAC----VACLLISLCLSLDTISSRTSPSPLINLYLPVSSSNTLLIILCFFSHSSFVIG 356
PS C V +L SLC S D S+R + + V S +T+L C+FSHS G
Sbjct: 108 PSTCNLVVVNVMLGSLCRSSDLASARAFFDGIPDK--DVVSWSTMLA--CYFSHSRVAEG 163
Query: 355 AMAFEISINSTGISAD 308
F +T ++AD
Sbjct: 164 LAFFRTMTFTTQLAAD 179
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 279 SQSRDKSPEVSADIPVELMEISKAMAPMTKEE 374
S S+++S SAD+PV L+E+ + KEE
Sbjct: 368 SNSQNESVPTSADVPVGLVEVGSNSNDLRKEE 399
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 318 IPVELMEISKAMA--PMTKEEWEKKQSIIRRVLDE 416
+P+ ++ IS +A P+ KEEWEK + I LD+
Sbjct: 377 LPLAIISISGLLANRPVIKEEWEKVKESIGFALDK 411
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +3
Query: 342 SKAMAPMTKEEWEKKQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERHKEINRQATQAD 521
+K +A +TK EK R + DEE +Y K DGE SK++ +++A + D
Sbjct: 50 TKGVAAVTKAAGEKW----RAMSDEEKAQYGGKKPDGESKPAAASKKKESTSSKKA-KTD 104
Query: 522 GA 527
GA
Sbjct: 105 GA 106
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 318 IPVELMEISKAMA--PMTKEEWEKKQSIIRRVLDEE 419
+P+ ++ I+ +A P TK+EWE+ ++ I VL+ +
Sbjct: 378 LPLAIVNIASLLATKPATKQEWERVKNSIFCVLERD 413
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 318 IPVELMEISKAMAPMTKEEWEKKQSIIRRVLDEETGRYRLIKGDGEVLE--EIVSKERHK 491
+ +LME +K E ++ K+ ++LD+E + IK + + L+ E+V+ E+ K
Sbjct: 593 LEAQLMEANKTCEEAKAETFQWKE----KLLDKEN-ELQNIKQENDDLQAKELVASEKIK 647
Query: 492 EINRQATQADGA 527
E++ A DGA
Sbjct: 648 ELSVLANAKDGA 659
>02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941
Length = 234
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 448 SPLINLYLPVSSSNTLLII--LCFFSHSSFVIGAM 350
SPL+NL+ P ++ T L + F + +SFV GA+
Sbjct: 30 SPLLNLFTPPPATTTTLYSGDIMFINTASFVAGAV 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,078
Number of Sequences: 37544
Number of extensions: 210669
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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