Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m04
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    31   0.54 
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    30   1.6  
U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    29   3.8  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
 Frame = +3

Query: 282 QSRDKSPEVSADIPVELMEISKAMAPMTKEE-------WEKKQSIIRRVLDEETGRYRLI 440
           +S  K P ++A+ P ELM +++  A + K+E       W++ ++  R++ ++E  + R  
Sbjct: 182 KSSSKEPAMNANNPSELMRVAEDRARIEKKEEEMEHKDWDELEARRRKIFEDEKEKNR-- 239

Query: 441 KGDGEVLEEIVS 476
           + D  + E +VS
Sbjct: 240 EDDASIRESMVS 251


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 357 PMTKEEWEKKQSIIRRVLDEETGRYRLIKGDGEVLEEIVSKERHKEINRQA 509
           P  K +  +KQ  ++R LDE T   + +K DG   + I+S+E  +  +R +
Sbjct: 505 PAVKPKVTEKQGGVKRKLDEPTVASKQVKSDG---KSIISEEERRRQDRDS 552


>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 583 LRVSFLILSI*YLGFFAAFIXN 648
           +R+ F  +S  YLGFF AFI N
Sbjct: 1   MRIPFYTVSAEYLGFFVAFITN 22


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 421 VSSSNTLLIILCFFSHSSFVIGAMAFEIS 335
           + +S   +IILC F  S F I  M F+IS
Sbjct: 626 IRNSKKTVIILCHFRFSKFYIYKMVFDIS 654


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 421 VSSSNTLLIILCFFSHSSFVIGAMAFEIS 335
           + +S   +IILC F  S F I  M F+IS
Sbjct: 626 IRNSKKTVIILCHFRFSKFYIYKMVFDIS 654


>AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical
           protein Y57G7A.5 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 315 DIPVELMEISKAMAPMTKEEWEKKQSIIRRVLDEETG-RYRLIKGDGEVLEEIVSKERHK 491
           +I  +L+E  + M    KE+ EK   +   VLDE+T  R RL +  G+ L    SK   +
Sbjct: 21  EIQTKLIEDLQEMVVKDKEKHEKLLKLGEHVLDEQTRLRTRLSEEFGDFLNR--SK---R 75

Query: 492 EINRQATQADGALF 533
            + R    ADG ++
Sbjct: 76  SLTRNFETADGNVY 89


>Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical
           protein F26D10.11 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 514 CVACLLISLCLS----LDTISSRTSPSPLINLYLPVSSSNTLLIILCFFSHS 371
           C+ CL  +L L     +  +SS T P+ + N   PV     + +   F+SHS
Sbjct: 172 CLCCLGFALALKKPPKIPELSSLTGPTVISNTIQPVPRPRKMSLQDSFYSHS 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,816,873
Number of Sequences: 27780
Number of extensions: 199227
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)