Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m02
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    36   0.003
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   3.7  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   4.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   6.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.4  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   8.4  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 394 WGTYRPGVYLGMKSREPWSPVFGLMW 471
           WG YRP +Y+G++ + P S + GLMW
Sbjct: 44  WGPYRPNLYVGIRPKIPDSLMTGLMW 69


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 464 RPKTGDHGSRLFIPKYTPGLYVPQYRSGTSRP 369
           + ++G H +R+++PK    +Y    R+   RP
Sbjct: 197 KDRSGSHVNRIYVPKAEQEMYEYYVRAAKERP 228


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
          Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 1  GHKFCAFHIAGWICNQCR 54
          GH+FC++ I G   N CR
Sbjct: 12 GHEFCSYRIKGEAQNFCR 29


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 398 PQYRSGTSRPDFCTTLTSSNGVFTLVSK*PTTPPYMATTKHIKP 267
           P  R+ T+RP     +T+++G  +  S  P+     A+TK ++P
Sbjct: 239 PPTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNASTKIVRP 282


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 425 PKYTPGLYVPQYRSGTSRPDFCTTLTSSNGVFTLVSK*PT 306
           P Y P   VP Y +  S+      LT S+G  +  S  P+
Sbjct: 276 PSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPS 315


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 415 HQVCMCPNIDQAPQDQIFVQP 353
           H +C  P+I Q  + +I++QP
Sbjct: 401 HHICDRPHISQKYEGRIYIQP 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,234
Number of Sequences: 5004
Number of extensions: 40103
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)