Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m02
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   7.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 385 DRYWGTYRPGVYLGMKSREPWSPVFGLMW 471
           DRYW    P  Y    SR   + +  ++W
Sbjct: 143 DRYWAITDPFTYPSKMSRRRAAVLIAIVW 171


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 486 SSKLIPH*TKNWGPWLPTF 430
           SS L  H TKN G W+  F
Sbjct: 482 SSLLFVHDTKNAGIWMIDF 500


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 486 SSKLIPH*TKNWGPWLPTF 430
           SS L  H TKN G W+  F
Sbjct: 397 SSLLFVHDTKNAGIWMIDF 415


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 486 SSKLIPH*TKNWGPWLPTF 430
           SS L  H TKN G W+  F
Sbjct: 716 SSLLFVHDTKNAGIWMIDF 734


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 296 YMATTKHIKPTKVFHRDSILNGFF 225
           Y +   +I   ++ H D +LN +F
Sbjct: 25  YTSKFDNINVDEILHSDRLLNNYF 48


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 296 YMATTKHIKPTKVFHRDSILNGFF 225
           Y +   +I   ++ H D +LN +F
Sbjct: 25  YTSKFDNINVDEILHSDRLLNNYF 48


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 296 YMATTKHIKPTKVFHRDSILNGFF 225
           Y +   +I   ++ H D +LN +F
Sbjct: 25  YTSKFDNINVDEILHSDRLLNNYF 48


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 390 SIRHLKTRFLYNLNVVKRRVYSRL*VTHHTAVYGH 286
           ++  L+   L + N +   VYS     HHT  +GH
Sbjct: 389 NVLDLEDNALASHNNLLNNVYSTPGPHHHTMGHGH 423


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 313 YLETRVNTPFDDVKVVQKSGLEVPDR 390
           Y    V  PF    ++++S +E PD+
Sbjct: 498 YKNADVRPPFTYASLIRQSIIESPDK 523


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 488  AAASSYHIRPKTGDHGSRL 432
            AAA++ +IRP T D+  +L
Sbjct: 1108 AAAAATNIRPGTADNKPQL 1126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,738
Number of Sequences: 438
Number of extensions: 2787
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)