Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28l16
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0695 + 5730932-5731198                                           33   0.14 
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    29   1.7  
05_04_0286 + 19833114-19834053,19834149-19834165                       29   1.7  
02_04_0381 - 22497519-22497769,22498157-22498247                       28   3.1  
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     28   4.0  
04_03_1035 - 21887562-21890030                                         28   4.0  
06_03_0884 + 25651238-25652164,25653851-25654504                       27   7.1  
03_04_0134 - 17593449-17594702                                         27   7.1  
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    27   9.3  

>11_01_0695 + 5730932-5731198
          Length = 88

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 283 PADLQLLQDVGKRACVRRGGNCDHRPGDCCHSSSCRCNL---WGSNC 414
           P  + ++    K AC+  GG C  RP DCC +  C   +   +GS C
Sbjct: 40  PRLMDVVSAESKLACLPAGGFCMFRPMDCCGNCGCLYPVGVCYGSRC 86


>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
            21260180-21260461,21261084-21261587,21261973-21261981,
            21262122-21262196,21262375-21262449,21262557-21263494,
            21263577-21263607,21263694-21263979,21264691-21264905,
            21265329-21265437,21265556-21265611,21265730-21265822,
            21266348-21266393,21266496-21267221,21267489-21267550,
            21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 226  YIDP-GDDDLEVNLPDYGEDPADLQLLQD 309
            +++P  D+ +E   PDY EDP +++L +D
Sbjct: 1193 HVEPVADEKMEDEEPDYEEDPEEVELYED 1221


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 322 ACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRC 420
           AC   GG C H  GD  H   C C  W S   C
Sbjct: 254 ACRATGGVCGH-DGDS-HGDLCLCGDWNSTSNC 284


>02_04_0381 - 22497519-22497769,22498157-22498247
          Length = 113

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
 Frame = +1

Query: 235 PGDDDLEVNLPDYGEDPADLQLLQDVGKRACVRRGGNCDHRPGDCCH------SSSCRCN 396
           P  +D   + PD+ ++P         GK    +  G CD   GDC H        SC C+
Sbjct: 46  PDHEDPSPSPPDHEDEPPPPS---SPGKEDVCKGKGCCDWSGGDCKHYCDGYDDKSC-CD 101

Query: 397 LWGSNC 414
            W  +C
Sbjct: 102 DWSGDC 107


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 265 ASSLPDHRLRDQYKRHEPILL 203
           A +LP H +RD  +RH P++L
Sbjct: 56  AGALPHHAMRDLARRHGPLML 76


>04_03_1035 - 21887562-21890030
          Length = 822

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +1

Query: 358 PGDCCHSSSCRCNLW-GSNCRCQRMG 432
           PG C  S SC C +W GS   C   G
Sbjct: 327 PGPCAPSKSCSCGVWSGSAQLCAGSG 352


>06_03_0884 + 25651238-25652164,25653851-25654504
          Length = 526

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 265 ASSLPDHRLRDQYKRHEPILL 203
           A  LP H +RD  +RH P+++
Sbjct: 58  AGKLPHHAMRDLARRHGPVMM 78


>03_04_0134 - 17593449-17594702
          Length = 417

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 337 GGNCDHRPGDCCHSSSCR 390
           G  C HR GD   SSSCR
Sbjct: 107 GDACHHRGGDLLSSSSCR 124


>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 298 LLQDVGKRACVRRGGNCDHRPGDCCHSSSCR 390
           L+  +G++A     G C   PG C  S SCR
Sbjct: 140 LMFQIGEKATYYNMGGCKDMPGSCT-SKSCR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,758,641
Number of Sequences: 37544
Number of extensions: 179632
Number of successful extensions: 501
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)