Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28l15
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    31   0.12 
SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit l44...    29   0.28 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   1.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.9  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   7.9  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   7.9  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 280 LNLTLVRSQDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQE 420
           +N  + R    +ES+ + + + E E   N+ +  LQ+SD+ED D++E
Sbjct: 21  INALIARFIRPKESFLINSVEKESESKLNSKSTTLQSSDSEDWDSEE 67


>SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit
           l44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 64  YGVERIMS-DSSDDNQKPQILTAEYKDGQLQIVEVTPFDRDR-TESLTELSCSGSSKQYM 237
           YG+  I S  S D N KP +    YKDG+   V+ T  +  R TE + + S +   K+ M
Sbjct: 40  YGLNLITSLASKDTNSKPSVEVV-YKDGKKLTVDPTKMNIGRLTELIDDYSKTLKFKEMM 98

Query: 238 Q 240
           Q
Sbjct: 99  Q 99


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = +1

Query: 85  SDSSDDNQKPQILTAEYKDGQLQIVEVTPFDRDRTESLTELSCSGSSKQYMQVIDGDKGL 264
           SD  DDN K   L  E  +GQ    +    D D  E  +E+S   S K+    +  D   
Sbjct: 113 SDDEDDNGKYSKLRYEDIEGQEDTNQANDLDAD--EEGSEISVPSSPKRMSFNLKEDMEE 170

Query: 265 VQFDLLNLTLVRSQDGEESYQLLAN 339
             FD     + ++ D E  Y    N
Sbjct: 171 GDFDENGNFIRKNYDPESQYDAWLN 195


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 283 NLTLVRSQDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQEYVMVDSDNGQGPL 459
           NL   R ++  ES    +++ +   + N  +    TSDTED   ++   V+ ++G+ PL
Sbjct: 39  NLPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGEDSYQVEWESGKDPL 97


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
 Frame = +1

Query: 190  ESLTELSCSGSSKQYMQVIDGDKG--------LVQFDLLNLTLVRSQDG-EESYQLLAND 342
            ++L   SCS   K    + DGDKG         +++D+ +L +     G     QL+A  
Sbjct: 1120 KNLFNFSCSNKIKGEEVLNDGDKGKRRTVLLATLEYDIPSLNICIKIGGLGVMAQLMARH 1179

Query: 343  CEGEGSENAVTCV--LQTSDTEDRDNQEYVMVD 435
             E E     + CV  +  S+ E+ D  E V++D
Sbjct: 1180 LEHEDIIWVIPCVGDVSYSNVEEDDPIEVVIID 1212


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 277 LLNLTLVRSQDGEESYQLLANDCEGEGSENAVTCVLQTS 393
           LLN +  + QD ++ Y +  N+  G G+ + V  V  TS
Sbjct: 637 LLNRSSSKLQDRDQEYLISKNNVNGNGNRDWVQPVNTTS 675


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 73  ERIMSDS-SDDNQKPQILTAEYKDGQLQIVEVTPFDRD 183
           +RI+SD  SDD  +P  ++    +  L I EV   D D
Sbjct: 222 KRIVSDDESDDYVEPDHISEASSEASLPIDEVESMDED 259


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +2

Query: 29  QLNTHTEIVNKNMAWNESCRIQVTTTKSPRS*QLSTKMDNYRLLRSPRSTVTGLRASRSC 208
           QL+   E VNK++   ++        KS R   L   ++ YRL       V  +      
Sbjct: 7   QLSLELETVNKDILLKKALLHYKDAIKSEREGNLGESLNKYRLAHKVHEDVESIYRRLER 66

Query: 209 LVVARRS 229
           L + +R+
Sbjct: 67  LQLCKRN 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,212
Number of Sequences: 5004
Number of extensions: 33220
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)