Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28l15
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    30   0.015
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 29.9 bits (64), Expect = 0.015
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 319  SYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQEYVMVDSDNGQ 450
            SY L++N CEG+    A +        ++R  Q  V+ DS++G+
Sbjct: 1626 SYALISNQCEGDSLNVAKSLQDHDCIRQERTQQRNVISDSESGR 1669


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 61  EYGVERIMSDSSDDNQKPQILTAEYKDGQLQIVEVT 168
           EYG  +++   SD   +P I+     DG  ++  +T
Sbjct: 96  EYGGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMT 131


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 61  EYGVERIMSDSSDDNQKPQILTAEYKDGQLQIVEVT 168
           EYG  +++   SD   +P I+     DG  ++   T
Sbjct: 96  EYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLAT 131


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 61  EYGVERIMSDSSDDNQKPQILTAEYKDGQLQIVEVT 168
           EYG   ++   SD   +P I+     DG  ++   T
Sbjct: 92  EYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLAT 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,743
Number of Sequences: 438
Number of extensions: 2403
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)