Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28l10
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    29   0.37 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   6.1  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 119 TAKGYVLFGHQMGIESSGDFGNGFQNFILINCFXLI 12
           T +G     + MGIE++  F  GF  FI++  F L+
Sbjct: 304 TLRGIKRISYMMGIETTNFFATGFSFFIILLFFSLL 339


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 152  PMRLMLMISYXTAKGYVLFGHQMGIESSGDF 60
            P+R   M+   T  GY +FG +  +E + D+
Sbjct: 918  PVRQGAMLIPVTENGYEIFGEKKKVEENADY 948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,775
Number of Sequences: 5004
Number of extensions: 35945
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)