Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28l04
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    85   6e-18
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.44 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.4  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   4.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.2  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    25   9.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.5  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   9.5  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = +1

Query: 124 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR--ETQYPVAPQSQVYDYI 297
           +GS+ISLISK+DIRY G L  ++ Q+ T+AL  VR  GTE R  +    + P   V+DYI
Sbjct: 5   IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYI 64

Query: 298 LFRGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYP 471
           +FRGSD+KD+R+     + P+ P +   + P  +G+    GQY   +N     Q P P
Sbjct: 65  VFRGSDVKDLRI-EEPATTPSAPPVQPPNDPAIIGSN--SGQY--NWNQAQTAQPPQP 117


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +1

Query: 376 QMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQL 519
           QM     L +   P   +G   HP V QTP P   P    PSG  NQL
Sbjct: 138 QMQSREALLSQQIPPNQIGINAHPAVRQTPQPA--PSPNTPSGNANQL 183


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +1

Query: 424 YVGQFNHPVVGQTPYPQYH----PMAGFPSGV 507
           YVGQ + PV    P P Y+    P AG P+ +
Sbjct: 111 YVGQSSQPVPSYNPLPSYNTASLPNAGIPAAM 142


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 441 PSSCWTNSISSVSSNGWLSKWS 506
           P+S   N    V+ NGWL++WS
Sbjct: 349 PNSTVLNEHGYVTYNGWLAQWS 370


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/81 (24%), Positives = 29/81 (35%)
 Frame = +1

Query: 346 PSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 525
           PS  N  A    + P    +  AP        +   G  P P Y P  G+P   +   N+
Sbjct: 64  PSYSNSAA---PATPAASASSAAPAPAPAASQNRAYGAAPQP-YPPQGGYPQQPYYYPNQ 119

Query: 526 TSELSPQQSVELASQAQPVTA 588
            +    Q +      AQP T+
Sbjct: 120 PNYYPAQPAYAQPVYAQPATS 140


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +1

Query: 187 VDPQECTIALASVRSFGTEDRETQYP-VAPQSQVYDYILFRGSDIKDIRVLNNVPSMPND 363
           + P+    +  SV       RE QY     + Q  +  L    ++   ++ N+    P +
Sbjct: 55  IKPRPGPTSALSVEEAKFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKE 114

Query: 364 PAIMQMSVPPTLGTGPAPGQYVGQFNHPV 450
             +    V P   T     +YV Q+N+PV
Sbjct: 115 VEVNSEVVKPDSATTENENRYVNQYNYPV 143


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 415 PGQYVGQFNHPVVGQTPYPQYHP-MAGFPSGVHNQL---NKTSELSPQ 546
           PG YV Q+ +PV  QTPY Q  P M+   S V +Q+     +S LSP+
Sbjct: 416 PG-YVPQY-YPVYHQTPYTQNFPNMSRSGSQVSDQVVESPNSSTLSPR 461


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 412 APGQY---VGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 525
           AP Q+   +G+FNH  +G         +A    G+H  LN+
Sbjct: 380 APRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHEDLNR 420


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = +1

Query: 400 GTGPAPGQ--YVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQS 552
           G  PAP Q  Y G   +P     P   Y P  G+P G +          PQ S
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYPAQQPMYVQQPQAS 63


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 445 PVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQSVELAS 567
           P + +  +P Y PM  FP+ +  + +    +S   S  L S
Sbjct: 202 PTIDRCDFPNYVPMFAFPNDITIKESDVRPVSTYHSFALTS 242


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = -2

Query: 639 ALVFHLVGVVVHSRTNWSRYRLSL*CQFHRLLRRQLTRLVELVVNSTWKASHWMILRIWS 460
           AL F   G+V+H    W  Y        HR  +     L + +  ST+  S     R+W+
Sbjct: 28  ALAFTNTGLVLHGPRRW--YTTDNGFLLHRDSK---VSLADYIHESTFDPSKGYYSRLWT 82

Query: 459 LSNNWMVKLPHIL 421
            S N +    H+L
Sbjct: 83  GSTNNLSHSVHVL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,693
Number of Sequences: 5004
Number of extensions: 62427
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)