Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28l04
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 108 4e-24
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical pr... 32 0.31
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 32 0.41
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 32 0.41
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 31 0.94
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 29 3.8
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 29 3.8
Z77135-3|CAB00878.1| 322|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF036701-5|AAB88367.1| 125|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical pr... 28 6.7
U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein. 28 6.7
U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein. 28 6.7
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 28 6.7
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 108 bits (259), Expect = 4e-24
Identities = 59/116 (50%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Frame = +1
Query: 103 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQ 282
MS+ P +GSKISLISK DIRYEG L+TVD + TIALA VRSFGTE R T PVA +
Sbjct: 1 MSNQTPYIGSKISLISKLDIRYEGILYTVDTNDSTIALAKVRSFGTEKRPTANPVAARDD 60
Query: 283 VYDYILFRGSDIKDI------RVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVG 432
VY+YI+F+ SDIKD+ ++ N +P DPAI+ +S + AP G
Sbjct: 61 VYEYIIFKASDIKDLIVCDTPKMANIGGGLPYDPAIISVSSRSAPASDGAPAASAG 116
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 34.3 bits (75), Expect = 0.077
Identities = 31/106 (29%), Positives = 47/106 (44%)
Frame = +1
Query: 337 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQ 516
N P M N+ A S P P+ QY + +TP+ + F S +HN
Sbjct: 194 NGGPEMENNRASSASSATPEDTQMPSTSQYFCS----IPKKTPFRKE-----FDSPLHNY 244
Query: 517 LNKTSELSPQQSVELASQAQPVTAPIGSGVNHHSNQVKDQGSMLDL 654
+ +TS SP +LA QAQ + G+ VN S ++ +LD+
Sbjct: 245 IYRTSRHSPLYRKKLAEQAQRMAVKNGTFVN-DSGVIELLSHLLDI 289
>Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical
protein C08B6.7 protein.
Length = 750
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 463 PYPQYHPMAGFPSGVHNQL---NKTSELSPQQSVELASQAQPVTAPIGSGVNHHSNQVKD 633
P PQYH G S +Q+ T +S E + ++ AP S HH N+
Sbjct: 65 PLPQYHMPPGIASAAASQIAAAGSTVRVSFLNGAEKSVESPEAVAPTSSTYEHHKNE--P 122
Query: 634 QGSMLDL 654
G+ +D+
Sbjct: 123 NGARIDM 129
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 345 SFNAQ*SCHYADVCTPNSGYW---TSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWS 506
+FN Q + Y+ N + T +WA + P++ + ++ +V+SNG LS WS
Sbjct: 876 AFNTQYTVRYSTAVDGNQHRYVNSTETWATVEGLRPATEYEFAVRAVASNGQLSTWS 932
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 345 SFNAQ*SCHYADVCTPNSGYW---TSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWS 506
+FN Q + Y+ N + T +WA + P++ + ++ +V+SNG LS WS
Sbjct: 876 AFNTQYTVRYSTAVDGNQHRYVNSTETWATVEGLRPATEYEFAVRAVASNGQLSTWS 932
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 358 NDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQY 477
NDP++ +P +LG+ P+P + PV GQ PQY
Sbjct: 264 NDPSVCSYRLPSSLGSAPSPSP--PRPLSPVFGQPAPPQY 301
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +1
Query: 346 PSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 525
P+ P A + PP PAP Y Q++ P V ++ P P++ PS +Q +
Sbjct: 470 PAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEPAVPPVSA-PSHYASQYD- 527
Query: 526 TSELSPQQSVELASQAQPVTAPIGS 600
+P + ++ S + + A I S
Sbjct: 528 ----APPEPIDSHSSSSQLPAHIAS 548
>Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical
protein F39H11.3 protein.
Length = 588
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +1
Query: 373 MQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQS 552
+QM P +G GQ Q P +GQ P HP P G +Q+ + + Q
Sbjct: 392 VQMQQQPQMGQQQMMGQ--PQMVQPQMGQPPMGGAHPGVVAPDGHPHQMMQQQQHPQQHH 449
Query: 553 VELASQAQPVTAPIGSG 603
++ P+ + G
Sbjct: 450 MQYQGMHDPMQGGMDEG 466
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 592 LEPLQAELVMPVPQIVEETTHSSC-*AGCELHLESQPLDDTEDMEFVQQ 449
L P Q +LV+P+PQ +EE + + ++ +PLDD E ++ Q+
Sbjct: 576 LHPNQPQLVLPLPQPIEEQLQTEVKEEPKDEGVKEEPLDDYEHVDNDQE 624
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 369 HYADVCTPNSGYWTSSWAVCGAV*PSSCWTNSISSVSSN 485
+Y C P+ GYWT +W+ V + W S + +S +
Sbjct: 111 NYTLACCPDGGYWT-TWSGYSKVSNQAAWQRSRTCLSGS 148
>Z77135-3|CAB00878.1| 322|Caenorhabditis elegans Hypothetical
protein T16A9.5 protein.
Length = 322
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Frame = +1
Query: 307 GSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQT-PYPQY-H 480
G D + P+M ++ + SV PT+ G A Q GQ + + T Y Y
Sbjct: 5 GQSAMDQSAVTGAPTMASEVQPVDASVAPTVSPGGA-SQLGGQEDASIGFVTKTYANYVQ 63
Query: 481 PMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTAPIGSGVNHHSNQV 627
+ G+ + + P Q +L SQ QP T + S + + +
Sbjct: 64 DIQQAAEGLRQRAAALQQDGPGQLQQLQSQIQPQTQELISALQETQSPI 112
>Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical
protein F38B7.3 protein.
Length = 407
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +1
Query: 364 PAIMQMSVPPTLGTG----PAPGQYV--GQFNHPVVGQTPYPQYHPMAGFPSGVH 510
P + S PP + G PA GQ G P GQ P P Y AG P+ H
Sbjct: 164 PPTVYPSAPPPVQPGYNPRPASGQSYPSGPQVPPAYGQYPQPGYPQPAGVPTSSH 218
>Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical
protein B0284.3 protein.
Length = 163
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 381 VCTPNSGYWTSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWSSQPAQQ 524
+C +S +S WAV + PSSC +ISS+++ S S +P+ +
Sbjct: 90 ICKQSSS--SSEWAVWASPVPSSCHPANISSIATKCKKSFPSEKPSNE 135
>AF036701-5|AAB88367.1| 125|Caenorhabditis elegans Hypothetical
protein ZC416.2 protein.
Length = 125
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 382 SVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHN 513
+ PP P P Y G N+ G PYP P +P G +N
Sbjct: 3 NAPPPYTAQPQP--YYGNANYAPQGSNPYPAQGP---YPQGYYN 41
>Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical
protein F58A3.1c protein.
Length = 629
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 439 NHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTAP 591
++ V Q P + P GF N + L P QS+ ++++ P P
Sbjct: 261 DYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITP 311
>Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical
protein F58A3.1b protein.
Length = 578
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 439 NHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTAP 591
++ V Q P + P GF N + L P QS+ ++++ P P
Sbjct: 210 DYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITP 260
>Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical
protein F58A3.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 439 NHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTAP 591
++ V Q P + P GF N + L P QS+ ++++ P P
Sbjct: 224 DYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITP 274
>U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 439 NHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTAP 591
++ V Q P + P GF N + L P QS+ ++++ P P
Sbjct: 211 DYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITP 261
>U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 439 NHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSELSPQQSVELASQAQPVTAP 591
++ V Q P + P GF N + L P QS+ ++++ P P
Sbjct: 224 DYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITP 274
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +1
Query: 331 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHP---MAGFPS 501
V N P P++ + PP P P Q ++P +P P + P + G+ S
Sbjct: 171 VYENNPIAPSELNVQVKRAPPQGPPPPPPPQAPADIDYPERLMSPPPTHQPRSILKGYSS 230
Query: 502 -GVHNQLNKTSELSPQQSVELASQAQ 576
++Q N T Q S E + Q
Sbjct: 231 QQYYSQTNLTESHHHQSSQETSLNPQ 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,121
Number of Sequences: 27780
Number of extensions: 358492
Number of successful extensions: 1015
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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