Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28l02
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   132   2e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    93   2e-20
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    93   2e-20
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    87   2e-18
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    86   3e-18
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    60   2e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    44   1e-05
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   1.2  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    27   1.6  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    27   2.1  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   6.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   6.3  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   8.3  

>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  132 bits (320), Expect = 2e-32
 Identities = 61/84 (72%), Positives = 74/84 (88%)
 Frame = +3

Query: 243 SEGVRGAVIGIDLGTTNSCVAVMEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKR 422
           +E V+G VIGIDLGTT SC+A+MEG+TPKV+ N+EG+RTTPS VAF+K+GERLVG+ AKR
Sbjct: 45  NEKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKR 104

Query: 423 QAVTNSGNTFYATKRLIGRRFDDP 494
           QAV N  NTF+ATKRLIGRRF +P
Sbjct: 105 QAVINPENTFFATKRLIGRRFKEP 128


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = +3

Query: 258 GAVIGIDLGTTNSCVAVMEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKRQAVTN 437
           G VIGIDLGTT SCVAVM+    +++ N +G+R TPS+VAF+ E ERLVG  AK QA +N
Sbjct: 35  GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFT-EDERLVGEAAKNQAPSN 93

Query: 438 SGNTFYATKRLIGRRFDD 491
             NT +  KRLIGR+FD+
Sbjct: 94  PENTIFDIKRLIGRKFDE 111


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 50/84 (59%), Positives = 59/84 (70%)
 Frame = +3

Query: 243 SEGVRGAVIGIDLGTTNSCVAVMEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKR 422
           SE   GA IGIDLGTT SCVAV E    +++ N +G+RTTPS VAF+ E ERLVG  AK 
Sbjct: 2   SEVYEGA-IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFT-ETERLVGDAAKN 59

Query: 423 QAVTNSGNTFYATKRLIGRRFDDP 494
           QA  N  NT +  KRLIGRR++DP
Sbjct: 60  QAAMNPRNTVFDAKRLIGRRYEDP 83


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 41/76 (53%), Positives = 52/76 (68%)
 Frame = +3

Query: 267 IGIDLGTTNSCVAVMEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKRQAVTNSGN 446
           IGIDLGTT SCV        +++ N +G+RTTPS+VAF+ + ERL+G  AK Q   N  N
Sbjct: 5   IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63

Query: 447 TFYATKRLIGRRFDDP 494
           T +  KRLIGR+FDDP
Sbjct: 64  TIFDAKRLIGRKFDDP 79


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 41/76 (53%), Positives = 52/76 (68%)
 Frame = +3

Query: 267 IGIDLGTTNSCVAVMEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKRQAVTNSGN 446
           IGIDLGTT SCV        +++ N +G+RTTPS+VAF+ + ERL+G  AK Q   N  N
Sbjct: 5   IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63

Query: 447 TFYATKRLIGRRFDDP 494
           T +  KRLIGRRF+DP
Sbjct: 64  TIFDAKRLIGRRFNDP 79


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 31/80 (38%), Positives = 45/80 (56%)
 Frame = +3

Query: 255 RGAVIGIDLGTTNSCVAVMEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKRQAVT 434
           R  V+GID G + + +AV   +   V+ N   +R+TPS V++  E  R +G  AK    +
Sbjct: 4   RTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYG-ERSRFLGEAAKSAEAS 62

Query: 435 NSGNTFYATKRLIGRRFDDP 494
           N  NT  + KRL GR +DDP
Sbjct: 63  NFRNTVGSLKRLAGRTYDDP 82


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +3

Query: 264 VIGIDLGTTNSCVAV-MEGKTPKVVENSEGSRTTPSHVAFSKEGERLVGMPAKRQAVTNS 440
           VIGI  G  NS +A   +GKT  V+ N EG+R  PS +++  + E   G+ A+ Q V N+
Sbjct: 26  VIGISFGNQNSSIAFNRDGKT-DVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83

Query: 441 GNTFYATKRLIGRRFDD 491
            N+    + L+G+  D+
Sbjct: 84  DNSVTNFRDLLGKSHDE 100


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 355 RDPSLFSTTLGVLPSMTATHEFVVPRSIPMTAPRTPSDLFLNCTPCRW*IGTV 197
           ++P   S T    PS           + P+  PRT  D+    +PC+  +GT+
Sbjct: 548 KEPEESSITPTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTSPCKRGLGTI 600


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 326 GCLALHDGNARVCRAQIDSNDGSTNT 249
           G +A+ +   RV   Q+DSNDGS +T
Sbjct: 277 GAVAIRNPYIRVVGIQMDSNDGSKST 302


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 132 GLSSDLYTQRNFSSILKSNATPTVPIYQRH 221
           GL  D   + + S I  ++  PTVPIY+ H
Sbjct: 65  GLKKDELVENSESYINDASFEPTVPIYESH 94


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 177 KLTKNFSAYTSLNLIRCTLKPFGRMPASRSTSLSRIKILY 58
           KL K+F  +T LNL++C    +  M   ++++   ++ LY
Sbjct: 603 KLNKDFDDFTPLNLLKCV--NYSLMEFQKNSTFDMLEKLY 640


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +3

Query: 168 SSILKSNATPTVPIYQRHGVQFRNKSEGVRGAVIGIDLGTTNSCVAVM-EGKTPKVVENS 344
           + IL    T  VP+ +   V   N+ +    A   I+  +     A   E K+    E  
Sbjct: 108 AKILIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQ 167

Query: 345 EGSRTTPSHVAFSKEGERLVGMPAKRQ 425
               ++PS+V+  + G+R+   P  R+
Sbjct: 168 SKETSSPSNVSGEERGDRVFASPLARK 194


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 493 GSSNRRPINLFVA*NVLPLFVTACRLAGIPTRRSP 389
           G+ NRRPI+  V  N+ P  +T  R A  P   SP
Sbjct: 524 GNQNRRPISFPVISNMQP-NITNVRSASAPLCSSP 557


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = +3

Query: 114 KALECTGLSSD--LYTQRNFSSILKSNATPTVPIYQRHGVQFRNKSEGVRGAVIGIDLGT 287
           K + C  + SD  L     FS +    + P   +    G    +  E V+  VIG D+G 
Sbjct: 275 KGVRCEFMQSDGGLVDVNKFSGLHAILSGPAGGVV---GFALTSYDEDVKIPVIGFDMGG 331

Query: 288 TNSCVAVMEGKTPKVVENSEGSRTTPS 368
           T++ V+   G    V E +    T  S
Sbjct: 332 TSTDVSRYGGSYEHVFETTTAGVTIQS 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,566
Number of Sequences: 5004
Number of extensions: 47028
Number of successful extensions: 129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)