Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k24
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.33 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   5.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 69  MNVDDGLPLTTSDKQNRTWR 128
           MN DD   L + DK+  TWR
Sbjct: 372 MNEDDNTSLVSLDKKQYTWR 391


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 250 HTHPSLTYLFNMDCILLLSVQCCTSSWVQS 339
           H H  L  +++M  I+ L   CC   W+ S
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IWIFS 83


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 482 ETQSQKSHNKDDTSGKERQ*YHEFNGQLSADXKGEQRHQARRTYR 348
           + Q +K HN+ +   +ER  +  ++     + K  +  +  R YR
Sbjct: 249 DRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYR 293


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 250 HTHPSLTYLFNMDCILLLSVQCCTSSWVQS 339
           H H  L  +++M  I+ L   CC   W+ S
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IWIFS 83


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 407 GQLSADXKGEQRHQARRTYRHLFDCTQDDVQHCT 306
           GQ+      E RHQA   +R L+     DV + T
Sbjct: 92  GQVFTMMNKEMRHQAVVLFRLLYSAKTFDVFYNT 125


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 407 GQLSADXKGEQRHQARRTYRHLFDCTQDDVQHCT 306
           GQ+      E RHQA   +R L+     DV + T
Sbjct: 92  GQVFTMMNKEMRHQAVVLFRLLYSAKTFDVFYNT 125


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 239 RHQGKAQRDPGHQVRH 192
           RHQ  AQ   GHQ  H
Sbjct: 795 RHQHAAQMIYGHQQSH 810


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 350 RHLFDCTQDDVQHCTDKRR 294
           R L D    D + CTDK+R
Sbjct: 66  RVLPDALATDCKKCTDKQR 84


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 350 RHLFDCTQDDVQHCTDKRR 294
           R L D    D + CTDK+R
Sbjct: 66  RVLPDALATDCKKCTDKQR 84


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 350 RHLFDCTQDDVQHCTDKRR 294
           R L D    D + CTDK+R
Sbjct: 66  RVLPDALATDCKKCTDKQR 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,572
Number of Sequences: 438
Number of extensions: 2640
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)