Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28k23
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 37 0.002
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 31 0.11
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 29 0.44
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 28 0.58
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 28 0.76
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 27 1.3
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 2.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 2.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 2.3
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 26 3.1
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 3.1
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 3.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 4.1
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 4.1
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 4.1
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 25 5.4
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 5.4
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 25 5.4
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.4
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 7.1
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 25 7.1
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 7.1
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 24 9.4
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 9.4
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 269 GTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISE 448
G N LGRK + F +L + S + I ++V R + G+ GGG++ + I IS+
Sbjct: 152 GVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISD 211
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 30.7 bits (66), Expect = 0.11
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 263 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 436
++ L++ +G++ + T+ ++ I+++++ P + I+VA+ G+S G L V+AP
Sbjct: 75 LSSPLMDRIGKRTSIMFWTIVYLIG-IILQVTAVPSWVQIMVAKIWTGLSIGALSVLAPG 133
Query: 437 FISE 448
F SE
Sbjct: 134 FQSE 137
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 0.44
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 266 TGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFIS 445
+G L + +GRK + V+ I+ S + +++V RF+ G G ++ P++I+
Sbjct: 140 SGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYIT 199
Query: 446 E 448
E
Sbjct: 200 E 200
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 0.58
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 263 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 436
++ + + +G++ IV T ++ I+++++ P + ILVA+ G+S G L V+ P
Sbjct: 43 LSSPVADKIGKRLSIIVWTTVYLIG-IIIQVTTVPSWVQILVAKIWTGLSIGALSVITPG 101
Query: 437 FISE 448
+ SE
Sbjct: 102 YQSE 105
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.9 bits (59), Expect = 0.76
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 269 GTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISE 448
G L + GR+ + L +S S + +AR LAGI GGGL M+ I S+
Sbjct: 87 GRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGGGGLGTMSSIISSD 146
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 226 AQERRVSFTEWRRQR-GQLGLEELRRVRRPDVGEAHQK*TVATRKRSEHLIQFSFHFHQQ 50
A R++ F++ + R G++ LR++ +V + T+A K EH+I + HQ+
Sbjct: 601 ASPRKLIFSDLPKTRSGKIMRRILRKILAGEVDQIGDLSTLADPKVVEHIIHAVHYAHQK 660
Query: 49 K 47
K
Sbjct: 661 K 661
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 263 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPIL-ILVARFLAGISGGGLLVMAPIF 439
I G L + GRK I + ++ +IV++++ + ++V RF+ G G ++ P++
Sbjct: 146 IAGALADFFGRKPV-IAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLY 204
Query: 440 ISE 448
+SE
Sbjct: 205 LSE 207
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 438 NIGAITSKPPPEIPARNLATRISIGDELSSTMVHDKTLNR 319
N G + +P P P N+ TRI I + S + + +NR
Sbjct: 631 NSGQSSGRPGPLSPNLNVTTRIDIKGKKGSMHLQPRDVNR 670
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 2.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 345 MVHDKTLNRVKTIPPF---FLPRLLISVPVMAVPSIAPNDGRLPRRD 214
++H T N T F FL L IS+PV +P+IAP LP +
Sbjct: 380 VMHIPTTNSPLTPQSFTNSFLGYLPISMPVANMPAIAPISVALPENN 426
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 1 EL*YRMWSAVVFCFFFFVGENERKIESGVHFF 96
+L YR ++ + FCF +N+ I +HFF
Sbjct: 57 KLVYRRYAGLYFCFCVDSTDNDLAILEMIHFF 88
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 319 SVQCFIMDHSGTKFITDTDPGCEVPSRNL 405
S + F+MD+ GT DP VPS+ L
Sbjct: 563 SKRLFMMDYDGTLTPIVRDPNAAVPSKKL 591
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 295 KKWWNRFNSVQCFIMDHSGTKFITDTDPG 381
K W R S F +H ++ + +DPG
Sbjct: 228 KNWKTRIYSFSVFFPEHMDSRVLVQSDPG 256
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 112 FTFDGLHQRLAFVHDGALQVRADPAVGAIQ*NSRV 216
+ +D LHQ GA V +DP G+I N+ +
Sbjct: 832 YWWDVLHQSFGVKLTGATSVASDPLKGSISKNASI 866
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 85 HLIQFSFHFHQQKKKNRIP 29
HLI+ SF HQ+ K R+P
Sbjct: 265 HLIKISFERHQEFKLERLP 283
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 398 RLGTSQPGSVSVMNLVPLWSMIK 330
+LG S+ G+++V + PLW +K
Sbjct: 127 KLGLSRAGAIAVQDDSPLWKYLK 149
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 275 LINSLGRKNGGIVLTLFNVLSWTIVELSSSPIL 373
++ ++G+ G+VL LF V W I +S +L
Sbjct: 2 VLQAIGKHALGVVLLLFVVFLWLISSFLTSSLL 34
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 405 EIPARNLATRISIGDELSSTMVHDKTLNRVKTIPPFF 295
EI A + IS+ +E M H+K + V T+PP F
Sbjct: 139 EIIAMTMEHYISLAEE----MAHEKITDLVLTVPPHF 171
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 20 GVRWYSVFFFLLVKMKGKLNQVFTSFACGYGSLLMGFTNVWPSYTTELFKSELTPLSAPF 199
G YS+ +F+ V + K+NQ++ S +G +V S+ S L S F
Sbjct: 24 GAFLYSLIYFVDVDLVSKVNQLYDQQIAPMLSDAIGTPSVNHSFELAPLDSHLVATSTTF 83
Query: 200 SE 205
E
Sbjct: 84 HE 85
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 390 NLATRISIGDELSSTMVHDKTLNRVKTIP 304
N + I ELS+ M D TLN VK P
Sbjct: 29 NSIKALPIQSELSAMMSKDNTLNHVKQEP 57
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 290 GRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLV 424
GRK G +V ++L S S I+ RF AG+ G +V
Sbjct: 120 GRKIGVLVPFFLSILFTIGTASSDSVAAIMCTRFFAGLFAGAPVV 164
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 208 SRVSPGQSTVVGSDARNSHNRNADQQSGQKKW 303
++ SP + V+ +S+NR Q + Q KW
Sbjct: 212 TKSSPVHNEVMAEPLPHSNNREVTQATNQPKW 243
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 313 FNSVQCFIMDHSGTKFI--TDTDPGCEVPSRNLRW 411
++++ F +D+ F DTDP ++PS L W
Sbjct: 270 YDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLVW 304
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 91 SEHLIQFSFHFHQQKKKNRIPPHSTSDII 5
+EH + HFH + + +IPP I+
Sbjct: 93 AEHDLLQIIHFHSRSRTRQIPPSILKSIL 121
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 374 ILVARFLAGISGGGLLVMAPIFISE 448
++ AR +AGI GGG+ I +S+
Sbjct: 180 LVAARAIAGIGGGGMNSTVSILMSD 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,628
Number of Sequences: 5004
Number of extensions: 40274
Number of successful extensions: 147
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -