Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k21
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    32   0.067
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.36 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   5.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   5.8  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   7.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.7  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.7  
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.7  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 31.9 bits (69), Expect = 0.067
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 187 HFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHF 366
           H + +V D   + KFY E+ GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 367 VVELTYNYGVTHYE 408
           ++ELTYN+G    E
Sbjct: 73  ILELTYNFGTEKKE 86


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 478 WPIKEHNGLKYVEAPWWLQILYC 546
           W  K +NG+K  E+  WL IL C
Sbjct: 411 WAAKRNNGIKEAESRLWLMILPC 433


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 125 SELKS*AQSC*IAKWLAVVLFISYLKSQI 211
           SE+K  +    I+ W++++LF+S+L  ++
Sbjct: 505 SEIKQYSSLILISLWISLILFVSFLNRRL 533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 179 RPLTILLFNNFELMTLVQN*VI 114
           + L +L+FNN +L TL+QN ++
Sbjct: 131 KQLFLLIFNNGKLRTLLQNAIV 152


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 484 IKEHNGLKYVEAPWW 528
           I +H+G KYVEA W+
Sbjct: 92  IDKHSGKKYVEAIWY 106


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -3

Query: 408 FVMRYTIVVGQFNNKMCIFRAISNHGF 328
           + M+ +I++G  +   C+F ++SN+ F
Sbjct: 523 YKMKLSIILGVIHMTFCLFLSLSNYRF 549


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 337 VGYGPEDTHFVVE--LTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKY 510
           + +G    H + E  ++Y+  +T Y    + +    ++  +  ++  +N PIK+   L +
Sbjct: 473 IHHGSSKKHKIAEQLMSYDIVLTTY----NVIAYEFKNKMAYDKSIEDNAPIKKFEHLPF 528

Query: 511 VEAPWWLQIL 540
            EA W+  IL
Sbjct: 529 FEAEWYRVIL 538


>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 485 IGQLLVCALFRLSLDCTVMPRKSFPCS*CVT 393
           +G++ +  L +L +  T  PR+SF CS  +T
Sbjct: 76  LGEMSLKFLIKLIVKMTDCPRQSFSCSELIT 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,104
Number of Sequences: 5004
Number of extensions: 45420
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)