Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k19
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   3.5  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   6.2  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.2  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   6.2  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   8.2  

>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 186 CAAVHTSRSHLDCYDNTGLTIDDTTFNKYVTNLSSYTSSYASANIVLRRTFVYFV 22
           C +V   + HL   D+  + + DTTF      LS +   Y  A  +   TF  FV
Sbjct: 448 CESVKACQEHLLAGDSYEMCLTDTTFVSAPPELSDF-EMYMRARSLNPATFAGFV 501


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 174 HTSRSHLDCYDNTGLTIDDTT--FNKYVTNLSSYTSSYASANI 52
           +TS +HL    N GLT + +T  F KY TN SS  S Y+++++
Sbjct: 281 NTSPNHLASVPNRGLTSNSSTGSFTKY-TNGSS-NSLYSNSSM 321


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 180 AVHTSRSHLDCYDNTGLTIDDTTFNKYVTNLSSYTSSYASAN 55
           A+H  R      D+T  T  + T     T+ SS  SS ASA+
Sbjct: 492 ALHPLRRETSILDSTNTTSTNATNTTTTTSSSSTASSSASAS 533


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 530 RVLLSFLEVRILFVSKLFSIFLSMFRRR 447
           R  LSFL +  LF+S L  IF + F+ +
Sbjct: 87  RAFLSFLSICFLFISFLNFIFSTRFQNK 114


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 509 RETTVEPCLFMYMMCTS 559
           RET + P  ++Y++CTS
Sbjct: 194 RETNMPPTWYLYVLCTS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,033
Number of Sequences: 5004
Number of extensions: 36190
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)