Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k19
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0742 + 21113682-21114567,21115413-21115552,21115637-211158...    29   2.7  
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39...    28   6.3  
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530...    28   6.3  

>07_03_0742 +
           21113682-21114567,21115413-21115552,21115637-21115847,
           21115947-21116184,21116281-21116431,21116535-21116825
          Length = 638

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 147 YDNTGLTIDDTTFNKYVTNLSSYTSSYASANIVLRR 40
           Y N   T +   FN+ V  L + T+ YA+ N   RR
Sbjct: 152 YSNANATTEQARFNRLVAALVNATADYAARNSTRRR 187


>05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-391105,
            391216-391422,391518-391658,392044-392202,392296-392476,
            393153-393252,393321-393470,393581-393705,394006-394096,
            394364-394472,394558-394657,395143-395307,395401-395506,
            395590-395894,396003-396241,397036-397114,397189-397327,
            398004-398054,398316-398770,398961-399158,399199-399261,
            400212-400436,400706-400988,401109-401170
          Length = 1368

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 5    LRRKHYTKYTNVRRRTMLADA*LEV*EDKLVTYLLKVVSSIVRPVL 142
            L+R  + K  N+  +++ AD  L +  DKL T L  +V+ +V+P++
Sbjct: 883  LKRNAFYKVFNMSGKSIDADQRLTLDVDKLTTDLAGLVTGMVKPLV 928


>01_06_1684 +
           39151412-39151702,39152410-39152548,39152926-39153040,
           39153232-39153332,39153688-39153809,39153885-39153976,
           39155288-39155393,39155477-39155631,39155904-39156031,
           39156349-39156479,39157171-39157268,39157371-39158162,
           39158472-39158523
          Length = 773

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 335 NVIKNIYFTHNTASAAPASPALDYTVNP*LFDC 237
           ++IK     H  A AA   P LD+  NP +F C
Sbjct: 239 DLIKEAVLFHPFAEAAYTGPLLDFGRNPFMFPC 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,246,060
Number of Sequences: 37544
Number of extensions: 211213
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)