Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k19
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024793-6|AAF60688.1|  162|Caenorhabditis elegans Hypothetical ...    32   0.26 
Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell death-re...    31   0.80 
AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homo...    31   0.80 
AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81082-2|CAE17818.1|  124|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical ...    29   3.2  
U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone...    27   9.9  
AF273773-1|AAG15122.1|  555|Caenorhabditis elegans nuclear recep...    27   9.9  

>AC024793-6|AAF60688.1|  162|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.5 protein.
          Length = 162

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -1

Query: 183 AAVHTSRSHLDCY--DNTGLTIDDTTFNKYVTNLSSYTSSYASANIVLRRTFVYFV 22
           AA   + S +  Y  D+  +T+D  T   Y+ ++S+ TSSY+ +++++  TF   +
Sbjct: 32  AAFSRNNSMISDYKIDSLSVTVDGMTSQAYIDSISTQTSSYSLSSMIVIITFALVI 87


>Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 562 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 455
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical
           protein K04H4.6a protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 562 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 455
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 562 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 455
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell
           death-related nuclease 6 protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 562 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 455
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homolog
           K04H4.6 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 562 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 455
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 305 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 340


>AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.9 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -1

Query: 183 AAVHTSRSHLDCY--DNTGLTIDDTTFNKYVTNLSSYTSSYASANIVL 46
           AA   + S +  Y  D+  +T+D  T   Y+ ++S+ TSSY+ +++++
Sbjct: 148 AAFSRNNSMISDYKIDSLSVTVDGMTSQAYIDSISTQTSSYSLSSLMI 195


>Z81082-2|CAE17818.1|  124|Caenorhabditis elegans Hypothetical
           protein F42G4.7 protein.
          Length = 124

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -1

Query: 144 DNTGLTIDDTTFNKYVTNLSSYTSSYASANIVL 46
           D+  +T+D  T   Y+ ++S+ TSSY+ +++++
Sbjct: 8   DSLSVTVDGMTSQAYIDSISTQTSSYSLSSLMI 40


>AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical
           protein C55C2.3 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 430 YTAHRNLRRNMERKIENNFET-NKIRTSRNDSRTLPFYVHD 549
           YT H +L R +E K  N F+   K+  ++N+S     Y +D
Sbjct: 75  YTIHFHLARQLEEKYMNKFKKYKKLALNKNNSERESGYTYD 115


>U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical
           protein T20F5.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 171 TSRSHLDCYDNTGLTIDDTTFNKYVTNLSSYTSSYASANIVLRRTF 34
           TS  H + Y+N+  T++ +TF K     +  + S++  N V + +F
Sbjct: 94  TSNRHSNIYENSSTTMNYSTFRKMSLESTHSSVSHSMQNDVEKTSF 139


>U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 22 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 56  TLFFGGRSCTSCNVF 12
           TL FGGRSC +C  F
Sbjct: 106 TLHFGGRSCKACAAF 120


>AF273773-1|AAG15122.1|  555|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 56  TLFFGGRSCTSCNVF 12
           TL FGGRSC +C  F
Sbjct: 82  TLHFGGRSCKACAAF 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,201
Number of Sequences: 27780
Number of extensions: 205165
Number of successful extensions: 596
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)