Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28k15
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 36 0.005
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 34 0.015
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 33 0.035
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 31 0.11
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 29 0.57
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 29 0.57
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 28 0.75
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 1.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 1.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 2.3
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 26 3.0
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 26 3.0
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 4.0
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch... 25 5.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 5.3
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 25 7.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.0
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 25 9.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.2
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.2
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 35.5 bits (78), Expect = 0.005
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Frame = +1
Query: 73 VVITGAAGFLGSRLADALLKPNSEL--CVTELVLVDTI--LPPSRKDPRVITLALDITTP 240
V++TG GF+G+ +A+ LL+ + V + D + L P KD + D++
Sbjct: 6 VLVTGVTGFIGAHVAEQLLQAGYRVRGTVRSMEKADELIRLNPGLKDKIEFVIVKDVSAS 65
Query: 241 EAARKLVDTDTDVLFHLAA--VVSGHAEEDFDLGMKVNFNATRSLLEAARHRATKLRFVF 414
A ++ D +++ H+A+ V + L + T +LEAA+ + R V
Sbjct: 66 NAFDGVL-KDVELICHIASPFFVENVTDNKSQL-LDPAVKGTLGILEAAQGVKSIKRIVI 123
Query: 415 TSTVGVFG 438
TS+ G
Sbjct: 124 TSSFAAVG 131
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 33.9 bits (74), Expect = 0.015
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 22/173 (12%)
Frame = +1
Query: 76 VITGAAGFLGSRLADALLKPNSEL---CVTELVLVD----TILPPSRKDPRVITLALDIT 234
+ITG AGF+GS D + + C+ +L V L P L +D+
Sbjct: 13 LITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLA 72
Query: 235 TPEAARKLVDTDTDVLFHLAAVVSGHAEEDFDLGM-------KVNFNATRSLLEAAR--- 384
T + + + +++ AE D K N +T++LLE R
Sbjct: 73 TNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQNLLECVRILL 132
Query: 385 ----HRATKLRFVFTSTVGVFG-GDLPPIITDQTAATPQNSYGIAKAMSELLI 528
+L FV ST V+G D + +++ P + Y +KA +L+I
Sbjct: 133 GKKEELRNRLNFVHVSTDEVYGEQDENASVDEKSKLNPTSPYAASKAAVDLII 185
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 32.7 bits (71), Expect = 0.035
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Frame = +1
Query: 73 VVITGAAGFLGSRLADALLKPNSELCVTELVLVDTILPPSRKD----PRVITLALDITTP 240
V++TG AG++GS LL+ ++ + + + + R + +VI +D+
Sbjct: 9 VLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSRVEAVHRIEKLTGKKVIFHQVDLLDE 68
Query: 241 EAARKL-VDTDTDVLFHLAAVVSGHAEEDFDLG-MKVNFNATRSLLEAARHRATKLRFVF 414
A K+ + + + H A + + L K N + T +L+E + + FVF
Sbjct: 69 PALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVR-DFVF 127
Query: 415 TSTVGVFGGDLPP 453
+S+ V+G P
Sbjct: 128 SSSATVYGDPTRP 140
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 67 MKVVITGAAGFLGSRLADALLKPNSEL 147
M++ +TGAAGF+GS + LL+ E+
Sbjct: 1 MRIFVTGAAGFIGSEIVRQLLEAGHEV 27
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 28.7 bits (61), Expect = 0.57
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -2
Query: 134 GFSKASAKREPKKPAAPVMTTFIFEFSLNFQKNVARS 24
G KA AK +PK+ A P+ TTF F N +K+V+ S
Sbjct: 2 GKRKAKAKVKPKRRAPPLDTTFTCLF-CNHEKSVSCS 37
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.7 bits (61), Expect = 0.57
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 103 GSRLADALLKPNSELCVTEL--VLVDTILPPSRKDPRVITLALDITTPEAARKLVDTDTD 276
G+ + +K SEL T + + V+ +P ++ + L + +T E KLV D
Sbjct: 728 GATYVEIRVKATSELESTNMLWISVNQTIPQTKLNEASTELIMPVTQNEVTTKLVSIDDS 787
Query: 277 VLFHLAAVVSGHAEEDFDLGMKVNFNATR 363
L + E L + VNF+ +
Sbjct: 788 YTLELCMAQWWSSLEPMVLDIDVNFHGIK 816
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 0.75
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 12/164 (7%)
Frame = +1
Query: 73 VVITGAAGFLGSRLADALLKPNSELCVTELVLVDTILPPSRKD----PRVITLALDITTP 240
+++TG AG++GS L+ ++ + + + +R + + LD+
Sbjct: 8 ILVTGGAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEFIVRKSIKFFKLDLRDK 67
Query: 241 EAARKLVDT-DTDVLFHLAAVVSGHAEEDFDLGMKV---NFNATRSLLEAARHRATKLRF 408
E ++ DT + H AA+ + E L ++ N T +LL R K
Sbjct: 68 EGLAQIFDTFKIKGVIHFAALKA--VGESMKLPLEYYDNNICGTITLLNVMREHRVK-TV 124
Query: 409 VFTSTVGVFGG----DLPPIITDQTAATPQNSYGIAKAMSELLI 528
VF+S+ V+G D I + P N YG K E +I
Sbjct: 125 VFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENII 168
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 159 FSHTQFGIWF*QSIS*TRTQKASSSCYDHFHF 64
F QF W+ SIS R+ +AS S + +FHF
Sbjct: 304 FWEEQFSSWYGPSISFLRSSQASQSLF-NFHF 334
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 348 IHFHSKIEVFFSMSTYDCSQMKQYIGISINEFTRSL-GCC 232
++F KI+ FF MST ++ IG+S N T+SL G C
Sbjct: 194 LYFDVKIDTFFWMST--DGRVYANIGVSSNTNTKSLFGLC 231
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 312 MSTYDCSQMKQYIGISINEFTRSLGCCDIEGECYYSWIFS 193
MS +M YI +SI + + D+ GEC SW+++
Sbjct: 457 MSLSSTKRMASYIKLSILK-KMVVYAMDLRGECMLSWLYN 495
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 384 TSSYEASFCFYQYCW 428
T+S E C+Y YCW
Sbjct: 574 TASPECQQCYYNYCW 588
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 345 HFHSKIEVFFSMSTYDCSQMKQYIGISINEFTRSLGCCDIEGECYYSWIFSGGW*DR 175
+F ++I +F D ++++ +S + C D E +C Y WI G DR
Sbjct: 331 YFMARISLFLEKIGIDMNRVRFRQHMSNEMAHYACDCWDAEIQCSYGWIECVGCADR 387
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 412 FTSTVGVFGGDLPPIITDQTAATPQNS 492
FT++ F DLP +TDQ A P S
Sbjct: 125 FTNSQKYFANDLPNSLTDQPLAQPSAS 151
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 413 LPVLLGCSEVTCPLL*LIKLPQ 478
LPV LG +E PLL L++LP+
Sbjct: 11 LPVALGGNEEESPLLMLVQLPK 32
>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 342 FHSKIEVFFSMSTYD--CSQMKQYIGISINEFTRSLGC 235
F S +E+F D C +++ + +N+F RS+GC
Sbjct: 56 FQSMVEIFRQEIANDVTCGRVETALLYFVNKFFRSVGC 93
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 446 RSPPNTPTVLVKTKRSFVARCLAASSN 366
RSP +TPT L+ + ++ CLA + N
Sbjct: 433 RSPTSTPTPLIDAVKQYI--CLALAKN 457
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 73 VVITGAAGFLGSRLADALL 129
V+ITG GF+ S A+ALL
Sbjct: 5 VLITGITGFVASHSAEALL 23
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 319 LQHVHLRLQPNETVHRY 269
L +VHL+L NET+ R+
Sbjct: 595 LYYVHLKLSGNETIERF 611
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 447 QVTSEHPNSTGKNKTKLRSSMSRCL 373
+V PN TGKN ++ S +S+C+
Sbjct: 495 EVDRREPN-TGKNLREIESQLSKCM 518
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 449 GRSPPNTPTVL---VKTKRSFVARCLAASSNDLVALKFTFIPRSKSSSA 312
G S +T VL +KTK F+ L + + LVA F F P +K S+
Sbjct: 328 GVSNASTAKVLRTYLKTKSEFLRTWLLKALSHLVAPSFYFNPSTKGYSS 376
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 406 FVFTSTVGVFGGDLPPIITDQTAATPQNSYGIAKAMSELL 525
F TV + P ++TD+TAA P S + K +L+
Sbjct: 317 FPLLDTVTMVQSITPDVLTDKTAAYPYFSTCLDKEFMDLI 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,481
Number of Sequences: 5004
Number of extensions: 39602
Number of successful extensions: 129
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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