Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k15
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    25   0.63 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   1.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.8  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 525 KKLAHSLSNAVRVLRCCGSLISYNRGQVTSE 433
           +K+AH+L + ++V+ C G  +       T E
Sbjct: 110 EKVAHALESGLKVIACIGEKLEEREAGKTDE 140


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 297 CSQMKQYIGISINEFTRSLGCCDIEGE 217
           CS   Q  G  I +  RS  CC   GE
Sbjct: 57  CSSYLQVSGSKIWQMERSCMCCQESGE 83


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 154 TELVLVDTILPPSRKDPRVITLAL 225
           T +  +D ILPPSR   + + L L
Sbjct: 227 TLIEALDAILPPSRPTDKALRLPL 250


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 324 LRSWNESEFQRNEIIAGGSET 386
           +R++NESE +RN  + G +ET
Sbjct: 366 IRNFNESENRRNSCL-GSTET 385


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 346 NFNATRSLLEAARHRATKLRF 408
           N NAT+ + + A  +   LRF
Sbjct: 538 NVNATKQIKDEANKKGVSLRF 558


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 169 VDTILPPSRKDPRVITLAL 225
           +D ILPP+R   + + L L
Sbjct: 175 LDAILPPTRPTDKALRLPL 193


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 169 VDTILPPSRKDPRVITLAL 225
           +D ILPP+R   + + L L
Sbjct: 232 LDAILPPTRPTDKALRLPL 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,526
Number of Sequences: 438
Number of extensions: 2767
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)