Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k11
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   1.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.8  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 432 SADFQGTRAMEGTDRDIRAAVPVTRATNLDTTNTD-PVSTGTP 557
           S DF+ T  M G + D+    P     NL+ T TD P+S   P
Sbjct: 425 SKDFKETEDMNGAE-DMHGRAPQITKDNLNLTTTDSPMSEAEP 466


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
 Frame = +3

Query: 267  TEIILATAARVSVTEIPV*VTATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASADFQ 446
            T+I+  T          V VT T  S     V+      T+  T+ DI  V    +    
Sbjct: 1015 TDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVV-IQTPTTVTATETDIVTVTTGYTGTET 1073

Query: 447  GTRAMEGTDRDI-RAAVPVTRATNLDTTNTDPVS-----TGTPRPTLVISLEATAT 596
             T  +  T        V +   T +  T TD V+     TGT   T+ ++   TAT
Sbjct: 1074 STVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTAT 1129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,722
Number of Sequences: 5004
Number of extensions: 25183
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)