Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28k11
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1243 + 25134422-25135201 31 0.93
06_02_0122 - 12095385-12095713,12096018-12096120 31 0.93
06_02_0123 + 12104187-12104252,12105455-12105775 30 1.6
05_03_0628 - 16367841-16369259 30 1.6
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 29 2.8
06_02_0120 + 12055076-12055175,12055322-12055725 29 3.8
10_08_0338 + 16916429-16916650,16916728-16917900 28 5.0
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 28 5.0
06_02_0125 + 12122812-12122911,12123647-12123993 28 6.6
>07_03_1243 + 25134422-25135201
Length = 259
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = -3
Query: 545 RNWICIGCIQICSPGN-----RHCRSDI-PVCTLHSPGTLK 441
+ W+C C++ C PGN C+ D+ P+CTL P T++
Sbjct: 84 KGWVCDLCMEHCPPGNFVYRCIQCKFDVHPLCTL-LPQTIR 123
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 497 GYPGYKSGYNQ-YRSSFDRYPATNAGNFFGGYGDGY 601
G+PGY GY Y + + G + GGYG GY
Sbjct: 88 GHPGYGGGYGGGYGRGYGGGYGGSGGGYGGGYGGGY 123
>06_02_0123 + 12104187-12104252,12105455-12105775
Length = 128
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +2
Query: 497 GYPGYKSGYNQ-----YRSSFDRYPATNAGNFFGGYGDGY 601
GYP Y GY Y + Y G + GGYG GY
Sbjct: 73 GYPRYGGGYGGGYGCGYGGGYGGYGGGYGGGYGGGYGGGY 112
>05_03_0628 - 16367841-16369259
Length = 472
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 RVTEIILATAARVSVT-EIPV*VTATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASA 437
R +E ++AT V V + P + P S IR T+ V++ VI +
Sbjct: 40 RASEEVMATRRIVKVRRQQPSSAPSNPFSAIRFTPSDTSAQATIPVSEPQPSDVITANAK 99
Query: 438 DFQGTRAMEGTDRDIRAAVPVT 503
D +A EG++ + A+PVT
Sbjct: 100 DSSSEKADEGSNGSGKDALPVT 121
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = -1
Query: 541 TGSVLVVSRFVARVTGTAALISRSVPSIARVP*KSAEASLITALISALVTTIVTAKPALI 362
TG + +R +A TG A +R++ + S A+ ITA I++ +VTA ++I
Sbjct: 106 TGVIASSTRTLATTTGVIASSTRTIAAATG----SHVAAAITAAIASSTCALVTATTSVI 161
Query: 361 TLTRITETGVAVT*TGISVTETRAAVA 281
T T T A +G + T A +A
Sbjct: 162 TST--TGALFATAASGAIASSTGALLA 186
>06_02_0120 + 12055076-12055175,12055322-12055725
Length = 167
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 497 GYPGYKSGYNQYRSSFDRYPATNAGNFFGGYGDGY 601
G PGY GY Q P G GYG GY
Sbjct: 75 GQPGYGGGYGQPGYGSGYGPGYGGGGSGPGYGGGY 109
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 497 GYPGYKSGYNQYRSSFDRYPATNAGNFFGGYGDGY 601
G PGY SGY P G GYG GY
Sbjct: 84 GQPGYGSGYGPGYGGGGSGPGYGGGYGSPGYGGGY 118
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 491 SAGYPGYKSGYNQYRSSFDRYPATNAGNFFGGYGDG 598
S GYPGY +G + Y N G +G YG G
Sbjct: 255 SGGYPGYGAGGYGAGTVGYGYGHANPGTAYGNYGAG 290
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 366 RAGLAVTMVVTKADIKAVIREASADFQGTRAMEGTDRDIRAAVPVTRATNLDTTNTDPVS 545
+ G A + AD+ A + A+ GT+R +RA+ TRA ++
Sbjct: 72 QGGAAAAVAEAPADVPVTSEVAELKAKLKEALYGTERGLRAS-SETRAEVVELITQLEAR 130
Query: 546 TGTPRPTLVISL 581
TP PT ++L
Sbjct: 131 NPTPAPTEALTL 142
>06_02_0125 + 12122812-12122911,12123647-12123993
Length = 148
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 497 GYPGYKSGYNQ-YRSSFD---RYPATNAGNFFGGYGDGY 601
G+PGY GY Y + +P ++G + GGYG GY
Sbjct: 86 GHPGYGGGYGGGYGQGYGCGYGHPG-HSGGYGGGYGGGY 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,542
Number of Sequences: 37544
Number of extensions: 171259
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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