Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28k02
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    44   1e-04
09_04_0452 - 17710180-17710968                                         31   0.56 
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   1.7  
09_04_0451 - 17707002-17707799                                         28   5.2  
09_04_0453 - 17715843-17716634                                         28   6.9  
06_01_1110 - 9137529-9137918,9138011-9138112,9138289-9138381,913...    27   9.2  
03_03_0237 + 15706391-15706699                                         27   9.2  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    27   9.2  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +1

Query: 469 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIK 591
           AV R++    +FF ++A+IM G+K  KDPR  I +G W  K
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK 119


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 478 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIG 609
           R+T AT   +  L +  +++G+  SKD  AG+ NG + + + L+IG
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLIIG 195


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = -2

Query: 431 FPGNSPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAE 252
           FPG SP+   +  F QN    + L +P      +   ++ S  A I+RE++   +     
Sbjct: 472 FPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQP 531

Query: 251 QHSEQAVLPQQHASCA 204
            +       Q+  S A
Sbjct: 532 MNLSPPTSEQKEGSTA 547


>09_04_0451 - 17707002-17707799
          Length = 265

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 478 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIG 609
           R+T AT   +  L +  +++G+ +SKD  AG+  G + + + L +G
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHASKDRPAGVTTGKYWMGFFLTLG 195


>09_04_0453 - 17715843-17716634
          Length = 263

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 478 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIG 609
           R T AT   +  L +  +++G+ +SKD  AG+ +G + + + L +G
Sbjct: 150 RFTAATLNAVALLTIGAVVLGLHASKDRPAGVTSGKYWMGFFLTLG 195


>06_01_1110 -
           9137529-9137918,9138011-9138112,9138289-9138381,
           9138465-9138719,9139002-9139258,9139341-9139445,
           9139555-9139834,9139932-9140212,9140362-9140482
          Length = 627

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 560 ALGSLEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPV 411
           A+G    + P+    ++R K+HVA  +L T +   A +Q+ +     S V
Sbjct: 154 AIGGKRVVAPLQPGKVTRSKKHVAPDVLATREVLVADTQAEIPIQATSEV 203


>03_03_0237 + 15706391-15706699
          Length = 102

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +1

Query: 274 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPG 429
           N +S+ +  A  LVL+ +   + L+ G+  E+ +    ++A D+T  G++ G
Sbjct: 4   NKSSNSISIAFFLVLIILASQVMLSHGIPLEMHRRYLLSHAADAT-KGVMEG 54


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 448 DEAVGYLAVYRITFATCLFFLLMALIMI 531
           +EA+GY+A   +  A+ L+ LLM L+++
Sbjct: 633 EEAIGYVAADELIEASFLYLLLMILLVL 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,103,705
Number of Sequences: 37544
Number of extensions: 319903
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)