Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28k01
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 177 4e-45
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 129 2e-30
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 123 1e-28
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 79 2e-15
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 62 4e-10
D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA... 38 0.006
AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical ... 38 0.006
U56965-9|AAB52662.2| 265|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical... 29 2.7
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 28 6.2
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 177 bits (432), Expect = 4e-45
Identities = 85/163 (52%), Positives = 105/163 (64%)
Frame = +3
Query: 132 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGN 311
S +S I A RTP+ + AA+ER + I+EV++G
Sbjct: 16 SAALSNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQ 75
Query: 312 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGM 491
VC AN GQAPARQA + AGL S TTVNKVC+SG+K+I+LAAQ +QTG QD + GGM
Sbjct: 76 VCQANAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGM 135
Query: 492 ESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNC 620
ESMS VPFY++RGE YGG Q++DGIV DGLTD Y+K HMGNC
Sbjct: 136 ESMSQVPFYVQRGEIPYGGFQVIDGIVKDGLTDAYDKVHMGNC 178
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 129 bits (311), Expect = 2e-30
Identities = 71/161 (44%), Positives = 92/161 (57%)
Frame = +3
Query: 141 VSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCS 320
+S +V I S RTP+ AAIER+G+ E+I+EV G V
Sbjct: 1 MSDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLP 60
Query: 321 ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESM 500
A LGQ RQ + AGLP +T TVNKVC+S MK+++ AA ++ G D IL G E+M
Sbjct: 61 AGLGQNVTRQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTENM 120
Query: 501 SNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCA 623
S VPFY+ RGE +GG+Q+ DGI DGL D+ K MG CA
Sbjct: 121 SQVPFYVPRGEIPFGGIQMTDGISKDGLEDIKEKGPMGLCA 161
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 123 bits (296), Expect = 1e-28
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Frame = +3
Query: 132 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKE--VYI 305
S +S + I A RTP+ + AA+ER + I+E V++
Sbjct: 94 SAALSNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFL 153
Query: 306 GNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAG 485
G VC AN GQA ARQA + AGL S TTVNK +SGMK+I+LAAQ +QTG QD+ + G
Sbjct: 154 GQVCHANAGQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGG 213
Query: 486 GMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNK 602
GMESMS VPF+L R E S Q V+ V DG++D ++K
Sbjct: 214 GMESMSQVPFFLARVEQSSNKYQ-VEQTVQDGISDFFDK 251
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 79.4 bits (187), Expect = 2e-15
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Frame = +3
Query: 252 AAIERAGIPKEEIKEVYIGNV-CSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKS 428
AA++ A + + + V GNV S+ G +R + +G+P++ TVN++C SG ++
Sbjct: 38 AALKHANVGADAVDHVIFGNVVASSRDGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQA 97
Query: 429 IMLAAQGLQTGAQDIILAGGMESMSNVPFYLK--RGETSYGGMQLVDGIVFDGLTDVYNK 602
++ AAQ ++ G +I+LAGG E+MS VPF ++ R T+ G + +++D L+D Y K
Sbjct: 98 VVNAAQAIKLGESNIVLAGGTENMSMVPFAVRDIRFGTALGKKYEFEDMLWDSLSDPYAK 157
Query: 603 FHMGNCA 623
MG A
Sbjct: 158 LAMGQTA 164
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 61.7 bits (143), Expect = 4e-10
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Frame = +3
Query: 114 TAMAAFST-KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEI 290
TA AA + K ++ +V+ AVRTP + A +E+ +P E++
Sbjct: 11 TARAASAVAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQL 70
Query: 291 KEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQD 470
+ G V AR+A + AG+P TV C S ++ L TG +
Sbjct: 71 DHIICGTVIQECKTSNIAREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNAN 130
Query: 471 IILAGGMESMSNVPFYLKR 527
I+AGG+E +S+VP R
Sbjct: 131 AIIAGGVELLSDVPIRYNR 149
>D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA
thiolase protein.
Length = 412
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = +3
Query: 246 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 425
V A++ + +I++ +G + A V G+P VN CASG
Sbjct: 37 VTTALDDCKMKYSDIQQATVGYLFGGTCCGQRALYEVGLTGIP----IFNVNNACASGSS 92
Query: 426 SIMLAAQGLQTGAQDIILAGGMESMS 503
+ L Q +++G D++L G E M+
Sbjct: 93 GLFLGKQIIESGNSDVVLCAGFERMA 118
>AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical
protein Y57A10C.6 protein.
Length = 412
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = +3
Query: 246 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 425
V A++ + +I++ +G + A V G+P VN CASG
Sbjct: 37 VTTALDDCKMKYSDIQQATVGYLFGGTCCGQRALYEVGLTGIP----IFNVNNACASGSS 92
Query: 426 SIMLAAQGLQTGAQDIILAGGMESMS 503
+ L Q +++G D++L G E M+
Sbjct: 93 GLFLGKQIIESGNSDVVLCAGFERMA 118
>U56965-9|AAB52662.2| 265|Caenorhabditis elegans Hypothetical
protein C15H9.2 protein.
Length = 265
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +2
Query: 314 LFCKFG-PSTCK-TSCNICRFAKKYHMYNCKQ--SMCLWH----EIYNVGSTRSTNWSPR 469
L C +G PS + T NI + H ++CK C ++ YN+ ST+ W+ R
Sbjct: 182 LNCIYGYPSVFRITRGNIVELLELSHFFDCKNVTMFCEYNLCNDTCYNIRSTQKMEWAIR 241
Query: 470 YN 475
YN
Sbjct: 242 YN 243
>AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical
protein F19B10.10 protein.
Length = 639
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 350 SCNICRFAKKYHMYNCKQSMCLWHEI 427
+C++ R A KY+ Y +QS LW I
Sbjct: 15 ACSLRRMANKYYPYTMRQSFPLWTSI 40
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 433 IIDFMPEAHTLFTVVHMVLFGKPANITACLAGA 335
I F E T FTV+ V FG P + T C GA
Sbjct: 443 ISGFCIEVGTAFTVLICVKFGIPISSTHCTVGA 475
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,287
Number of Sequences: 27780
Number of extensions: 303591
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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