Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28j23
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 53 3e-08
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 52 8e-08
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 50 2e-07
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 43 4e-05
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 40 3e-04
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 38 8e-04
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 38 0.001
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 38 0.001
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 38 0.001
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 37 0.002
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 36 0.003
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 35 0.007
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 35 0.009
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 34 0.013
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 34 0.017
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 32 0.067
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 30 0.20
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 30 0.20
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.82
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 1.4
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 25 5.8
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 52.8 bits (121), Expect = 3e-08
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Frame = +1
Query: 31 YMLLAVCGLVSTSEEMDVISMSFILPSAQCDLD--LTTQTKGWLNSIIFIGMMVGAYAWG 204
++L AV G+ D +S L DL L++ K + S ++ A G
Sbjct: 82 WVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSG 141
Query: 205 SVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNGAALGGSGPVIWSYFAEF 384
+AD +GRKR+L+ + + V + S+N + + RF+ G +G + ++ Y E
Sbjct: 142 WLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITEL 201
Query: 385 QPKKKRGAMLSFMAAFWTLGSLFVAGL 465
P + RG ++ F T G L L
Sbjct: 202 APARLRGRLVIIYVVFITGGQLIAYSL 228
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 51.6 bits (118), Expect = 8e-08
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 7/186 (3%)
Frame = +1
Query: 13 GYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG---WLNSIIFIGMM 183
G+GR+ + L V G S+ + + S IL +G +L +G++
Sbjct: 73 GFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQNLGLL 132
Query: 184 VGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNGAALGGSGPVI 363
VGA W AD++GR+ + + V + S N+ F + +GG+ PV
Sbjct: 133 VGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICVFDALWSFGVGGNLPVD 192
Query: 364 WSYFAEFQPKKKRGAMLSFMAAFWTLGSLFVAGLAWVIIPSEIGGSTGGFVYNS----WR 531
+ F E P + +L+ M+ +W +G + ++W +I + + + WR
Sbjct: 193 SAIFLEALPSSHQW-LLTVMSFWWAIGQVIANLVSWGLISNFSCPDDESVCHRADNKGWR 251
Query: 532 IFLLVM 549
FL M
Sbjct: 252 YFLFTM 257
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/113 (26%), Positives = 53/113 (46%)
Frame = +1
Query: 127 DLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYEL 306
+LT K ++ S +G ++G G++AD GRK V+ SI+ + + + +
Sbjct: 123 ELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWH 182
Query: 307 FMFFRFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSLFVAGL 465
+ RFV G +G + +I Y +E P K RG ++ T G + G+
Sbjct: 183 MIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGI 235
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 42.7 bits (96), Expect = 4e-05
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 145 KGWLNSIIFIGMMVGAYAWGSVADSLGRK------RVLIAISIVNALAIVASSFSQNYEL 306
+G +N+ IG + G +G + D GRK V++ I+ V +A+ S S ++
Sbjct: 95 RGLVNASANIGNIFGQLLFGFMGDFFGRKFVYGKEMVIVIIATVLVIAMPKSIHSPLSKM 154
Query: 307 FMFF--RFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSL 450
F R++ G +GG P+ + +E K+RG ++S + AF G+L
Sbjct: 155 MWVFCWRWLLGVGIGGDYPMSAAITSERSKIKRRGTLISLIFAFQGFGTL 204
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Frame = +1
Query: 145 KGWLNSIIFIGMMVGAYAWGSVADSLGRK------RVLIAISIVNALAIVASSFSQNYEL 306
+G +N+ IG + G +G + D GRK +++ I+ + +A+ S S ++
Sbjct: 95 RGLVNAASNIGNIFGQLMFGFMGDFFGRKFVYGKEMIIVIIATILLIAMPKSIHSPLSKM 154
Query: 307 FMFF--RFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSL 450
F R++ G +GG P+ + +E +RG ++S + AF G+L
Sbjct: 155 MWVFCWRWLLGVGIGGDYPMSAAITSERSKLNRRGTLISLIFAFQGFGTL 204
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 38.3 bits (85), Expect = 8e-04
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +1
Query: 133 TTQTKGWLNSIIFIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFS-QNYELF 309
++ +G + ++ +G G VAD +G++ +I + V + I+ + ++
Sbjct: 22 SSSRQGLITGMVNVGSFFGCLLSSPVADKIGKRLSIIVWTTVYLIGIIIQVTTVPSWVQI 81
Query: 310 MFFRFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSLFVA 459
+ + G ++G + Y +E P RGA+++ F TLG +F+A
Sbjct: 82 LVAKIWTGLSIGALSVITPGYQSEVAPAIMRGAIVTTYQLFITLG-IFIA 130
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 37.5 bits (83), Expect = 0.001
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +1
Query: 172 IGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNGAALGGS 351
+G++ G + +++ GR+ + + V AL + + S N +F+ FRF +G G
Sbjct: 89 LGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSG-LFGSV 147
Query: 352 GPVIWS-YFAEFQPKKKRGAMLSFMAAFWTLGSLFVAGLAWVIIPSEIGGSTGGFVYNSW 528
G S A+ KK RG +M ++T+ S+ G+A II I S+ G+ + W
Sbjct: 148 GLSNGSGSLADLFEKKDRG---KYMVIYFTVLSI-GPGIA-PIISGFISQSSIGWQWEFW 202
Query: 529 RIFLL 543
+ +L
Sbjct: 203 ILLIL 207
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.5 bits (83), Expect = 0.001
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +1
Query: 172 IGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNGAALGGS 351
+G++ G + +++ GR+ + + V AL + + S N +F+ FRF +G G
Sbjct: 89 LGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSG-LFGSV 147
Query: 352 GPVIWS-YFAEFQPKKKRGAMLSFMAAFWTLGSLFVAGLAWVIIPSEIGGSTGGFVYNSW 528
G S A+ KK RG +M ++T+ S+ G+A II I S+ G+ + W
Sbjct: 148 GLSNGSGSLADLFEKKDRG---KYMVIYFTVLSI-GPGIA-PIISGFISQSSIGWQWEFW 202
Query: 529 RIFLL 543
+ +L
Sbjct: 203 ILLIL 207
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 37.5 bits (83), Expect = 0.001
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +1
Query: 172 IGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNGAALGGS 351
+G++ G + +++ GR+ + + V AL + + S N +F+ FRF +G G
Sbjct: 89 LGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSG-LFGSV 147
Query: 352 GPVIWS-YFAEFQPKKKRGAMLSFMAAFWTLGSLFVAGLAWVIIPSEIGGSTGGFVYNSW 528
G S A+ KK RG +M ++T+ S+ G+A II I S+ G+ + W
Sbjct: 148 GLSNGSGSLADLFEKKDRG---KYMVIYFTVLSI-GPGIA-PIISGFISQSSIGWQWEFW 202
Query: 529 RIFLL 543
+ +L
Sbjct: 203 ILLIL 207
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 36.7 bits (81), Expect = 0.002
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 2/134 (1%)
Frame = +1
Query: 151 WLNSIIFIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVN 330
W + I +G D GRK+ L+A V + S++ + R +
Sbjct: 128 WTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAIA 187
Query: 331 GAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSLFVAGLAWVIIPSEIGGSTGG 510
G GG + ++ P K+RG + F+ +G S +GG GG
Sbjct: 188 GIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIG-------------SSLGGPVGG 234
Query: 511 FVYN--SWRIFLLV 546
+ + +WRI L+
Sbjct: 235 YFADQYTWRIGFLI 248
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 36.3 bits (80), Expect = 0.003
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Frame = +1
Query: 148 GWLNSIIFIGMMVGAYAWGSVADSLGRK------RVLIAISIVNALAIVASSFSQNYELF 309
G +N+ IG + G +G + D GRK +++ I+ V +A+ S + ++
Sbjct: 91 GLVNAAANIGNVFGQILFGFMGDFFGRKFVYGKEMIVVIIATVLVIALPKSIPTPLGKMM 150
Query: 310 MFF--RFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSL 450
F R++ G +GG P+ + +E +RG +LS + +F G+L
Sbjct: 151 WIFAWRWLLGLGIGGDYPMSATITSERSLLSRRGTLLSIVFSFQGFGTL 199
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.007
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +1
Query: 145 KGWLNSIIFIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFS-QNYELFMFFR 321
+G L ++ G VG + D G+++ ++ ++V ++ + ++ M +
Sbjct: 58 QGLLVGMVNTGTTVGCLLSSPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMMVAK 117
Query: 322 FVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSLFVA 459
G +G + Y +E P RGA+++ F TLG +F+A
Sbjct: 118 IWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFITLG-IFIA 162
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 34.7 bits (76), Expect = 0.009
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Frame = +1
Query: 55 LVSTSEEMDVISMSFILPSAQCDL----DLTTQTKGWLNSIIFIGMMVGAYAWGSVADSL 222
L+STS +M V P Q + L++Q S+ +G+ +G G ++D L
Sbjct: 85 LLSTSLQMYVFWTPNFYPGVQDSVMELWHLSSQVSLLGQSMFVLGVALGPLFLGPLSDLL 144
Query: 223 GRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNG----AALGGSGPVIWSYFAEFQP 390
GRK V I I+ ++ + ++NY + + G ALG + + +
Sbjct: 145 GRKLVYIGSLIIYVCFCISCALARNYAQLVISMLIMGVVGSTALGNVAGAVADVLGD-ED 203
Query: 391 KKKRGAMLSFMAAFWTLGSLFVAGLA 468
M FM + ++GS G+A
Sbjct: 204 SNWGMYMFIFMCSVASVGSPMGTGVA 229
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 34.3 bits (75), Expect = 0.013
Identities = 31/129 (24%), Positives = 49/129 (37%)
Frame = +1
Query: 76 MDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGRKRVLIAISI 255
+D ++ LP+ D + T + W+ S + A G + LGRK VL
Sbjct: 111 LDNTIVTTALPTIAEDFN-DTSSSSWIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIF 169
Query: 256 VNALAIVASSFSQNYELFMFFRFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFW 435
L SQN + R + G GG ++ ++ P + R +A W
Sbjct: 170 FFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISDITPLRTRPMYSGILATAW 229
Query: 436 TLGSLFVAG 462
G+ VAG
Sbjct: 230 --GAALVAG 236
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 33.9 bits (74), Expect = 0.017
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Frame = +1
Query: 127 DLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGRKRV----LIAISIVNALAI-----VA 279
D + +G +N+ IG ++G +G + D GRK V ++ + I L I +
Sbjct: 79 DYPSGIRGVVNAATNIGNIMGQLLFGFLGDFFGRKFVYGKEMMVVIIATILIICLPDRIP 138
Query: 280 SSFSQNYELFMFFRFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFWTLGSL 450
+ ++ LF F R + G +GG P+ S +E +RGA+L+++ + G+L
Sbjct: 139 TPTAKMMWLFAF-RVMLGIGIGGDYPMSASITSEQSLINRRGALLAWIFSNQGWGTL 194
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 31.9 bits (69), Expect = 0.067
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +1
Query: 160 SIIFIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNG 333
++ IG+M+G + +++ GR+ + I + AL + ++ S N +F+ FRF +G
Sbjct: 82 TLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSG 139
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 30.3 bits (65), Expect = 0.20
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 28 HYMLLAVCGLVSTSEEMDVISMSFILPSAQ-CDLDLTTQTKGW--LNSIIFIGMMVGAYA 198
H++ +AV G+ S+ S+ ++ + + TT K + I ++G +VG +
Sbjct: 75 HFLNVAVAGVALMSDGYCSNSIGTVITILRKLYPEETTHNKSLQDIGMIAYVGTIVGQLS 134
Query: 199 WGSVADSLGRKRVLIAISIVNALAIVASSFSQNYE 303
+G +D GRK +I +I+ ++ + + Y+
Sbjct: 135 FGWYSDRFGRKNGMITATIILIVSTALCTGAYGYK 169
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 30.3 bits (65), Expect = 0.20
Identities = 25/125 (20%), Positives = 48/125 (38%)
Frame = +1
Query: 76 MDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLGRKRVLIAISI 255
+D ++ +P+ +LD + W+ + + G +++ +GRK VL +
Sbjct: 105 LDQTVITTAIPTIVANLD-GGSSYSWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIV 163
Query: 256 VNALAIVASSFSQNYELFMFFRFVNGAALGGSGPVIWSYFAEFQPKKKRGAMLSFMAAFW 435
+ +QN + R V G GG ++ A+ P + R M W
Sbjct: 164 LFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGITSLVTIVIADITPLQTRPYYTGCMGVTW 223
Query: 436 TLGSL 450
L S+
Sbjct: 224 GLASV 228
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.82
Identities = 19/83 (22%), Positives = 33/83 (39%)
Frame = +1
Query: 202 GSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRFVNGAALGGSGPVIWSYFAE 381
G +++ +GRK VL ++ +QN + R V G GG ++ A+
Sbjct: 146 GIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGIMSLVTIVIAD 205
Query: 382 FQPKKKRGAMLSFMAAFWTLGSL 450
P + R M W + S+
Sbjct: 206 ITPLQTRPYYTGCMGVTWGVASV 228
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 349 SGPVIWSYFAEFQPKKKRGAMLSF 420
SGPV+WSY E KK SF
Sbjct: 320 SGPVVWSYVVENPESKKITDFFSF 343
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 467 AKPATNRLPRVQKAAMKLNMAPRFFFGWNSAKYDQITG-PDPPKAAPFTK 321
AK +R ++ A K P+FFFG +SA + + + PP A FT+
Sbjct: 215 AKTERDRRALIEAATSK---NPKFFFGSDSAPHPRSSKLKTPPAAGVFTQ 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,798
Number of Sequences: 5004
Number of extensions: 49794
Number of successful extensions: 157
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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