Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j23
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   4.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   4.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 352 GPVIWSYFAEFQP 390
           G V+W  F +FQP
Sbjct: 263 GQVLWEGFGDFQP 275


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 352 GPVIWSYFAEFQP 390
           G V+W  F +FQP
Sbjct: 263 GQVLWEGFGDFQP 275


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 285 LQSELRALHVLPLRERCRLGRVGTCDLVVFRG 380
           ++ E   L      ER    R  TCDL+ F+G
Sbjct: 22  VEDEFEPLEHFENEERADRHRRVTCDLLSFKG 53


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 384 EFREIRPNHRSRPAQGGTVHEAEEHEELVILTEG 283
           E  + +P H  R    G V       EL+ +T G
Sbjct: 265 ELIQSKPQHARRKVLAGIVQTKGSDAELICVTTG 298


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 285 LQSELRALHVLPLRERCRLGRVGTCDLVVFRG 380
           ++ E   L      ER    R  TCDL+ F+G
Sbjct: 22  VEDEFEPLEHFENEERADRHRRVTCDLLSFKG 53


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 41  WQYAVSSALPRRWTSSRC 94
           W +   S LP + TSSRC
Sbjct: 68  WIHVDISFLPEKSTSSRC 85


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +3

Query: 69  RGDGRHLDVV 98
           +GDGRH++V+
Sbjct: 205 KGDGRHMEVI 214


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 460 GLAWVIIPSEIGGSTGGFVYNSWRIFLLVM 549
           GLA+++ PS +    G  +++    F+L++
Sbjct: 357 GLAFLVYPSAVLELPGSSIWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 460 GLAWVIIPSEIGGSTGGFVYNSWRIFLLVM 549
           GLA+++ PS +    G  +++    F+L++
Sbjct: 410 GLAFLVYPSAVLELPGSSIWSCLFFFMLIL 439


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 151 WLNSIIFIGMMVGAYAWGSVADS 219
           WL  I  +  M+   AW S+ ++
Sbjct: 6   WLQQIFILLQMIHLIAWASLENT 28


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 289 SQNYELFMFFRFVNGAALGGSGPVIWSYFA 378
           S +Y L + +      AL G+G VIW + A
Sbjct: 46  SLHYLLALLYILFTFLALLGNGLVIWIFCA 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,705
Number of Sequences: 438
Number of extensions: 3358
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)