Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j18
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.44 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 411 YLGVNCEGIVNLSVRNGT 464
           YLG+ C+G+ ++  RN T
Sbjct: 9   YLGITCQGVTDIHSRNLT 26


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 414 LGVNCEGIVNLSVRNGT 464
           LG+ C+GI +++VR  +
Sbjct: 11  LGIACQGITSVTVRENS 27


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 492 PTLFWYLGQQ 463
           PT+FW+L +Q
Sbjct: 332 PTIFWFLTRQ 341


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 325 SRLTCGTKYGGPPISTS 275
           +R  CG   G PP++ S
Sbjct: 628 TRTVCGVAAGDPPLTIS 644


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 358 CSSSLARSYILSRLTCG 308
           C+SS+A S ++S   CG
Sbjct: 158 CTSSIASSGVVSAGECG 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,811
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)