Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j13
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   3.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   4.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   9.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   9.5  

>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 193 LFASVLNFLDFDLRIQHWLSNSILSFVERMVLS**NSFLYQEKVVSKIVLIFVTVLSLH 17
           LF   LNF DF      ++   +LSF+   VL   + +      V ++  I  T  SLH
Sbjct: 30  LFTGKLNFADFYYNTNPFVVGLLLSFILGNVLWGVSVWTKNTSQVDRLWPILPTAFSLH 88


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 135 DSQC*IRKSKSKKFRTDANSQKTGWISLRET 227
           D +C + K   K F ++ + +KT WI    T
Sbjct: 187 DLRCRVNKKAKKLFGSEPSIEKTNWIEAEFT 217


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 376 CAYI-SLGKVLAQRCIEFGIT 435
           C YI  LG+  A++C E GIT
Sbjct: 490 CGYILPLGRKTARKCTECGIT 510


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  NFIRTVPFVPQMTRLSSTANVEF 153
           NF   + F+P +TRL+  + V F
Sbjct: 663 NFNDIISFIPSITRLNELSQVSF 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,421
Number of Sequences: 5004
Number of extensions: 38442
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)