Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j10
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    38   0.001
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb...    33   0.031
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   1.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   4.7  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   6.2  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    25   8.2  

>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/124 (18%), Positives = 54/124 (43%)
 Frame = +2

Query: 194 SRVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXXXXXXXYQ 373
           S++ ++D+++                +E   + +  +A+K L +  +  A          
Sbjct: 6   SKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLY 65

Query: 374 ENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEES 553
             L+  T  QL  +EQL   +EF  I+  V+ GL+ G   ++++   + ++ + +I  + 
Sbjct: 66  SGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDR 125

Query: 554 REGI 565
            E +
Sbjct: 126 DEAM 129


>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +2

Query: 287 EKD-RKLAKKLLEEGKRDRAXXXXXXXX-YQENLLHNTDTQLEKLEQLTHDLEFAQIEIQ 460
           +KD +KLA+K+ E   RD++         YQ     +TD+ +   E   H   F  ++ Q
Sbjct: 22  KKDSKKLAEKVQEHSSRDKSPLEENGVSTYQMLRSKDTDSAMPMTEAQKH---FESVQEQ 78

Query: 461 VLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDQPK 577
            L   K  N  LK   D   IDE  +++E   E  D PK
Sbjct: 79  RLLQ-KAKNERLKTHKD--RIDEYNRLLESQSEHFDMPK 114


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 380 LLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGN 487
           LLHN D +LE+LE++  D+     E +     ++GN
Sbjct: 438 LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGN 473


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 210  CSVTLLTTFLCLPNKAPILFVLLQYKICIFSNMNEHLSQFI 88
            C   LL +FL   N   I    +  +IC  ++ NEH  Q++
Sbjct: 1156 CIENLLDSFLSKTNSYKIALNTVLVRICEEASRNEHSDQYL 1196


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 404 LEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDI-LNIDEIEKIMEESR 556
           LEK+ QLT + +  Q+E+ +L  L   N  +  V     ++D++    EE+R
Sbjct: 527 LEKINQLTSEKQILQVELDML--LNKENDLINDVESSQSSLDKLRNDAEENR 576


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 428 HDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDQPKR 580
           +DL +    +   + + + NV L+KVHD    ++ +  ++ +REGI+   +
Sbjct: 299 YDLSYLTEFLSTREAMTSLNVNLEKVHDWEECND-DVALQYAREGIESSSK 348


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 503 PSSVPHYLSLVHQVPEFQFVQIPN 432
           P S   Y   VHQ PEF FV + N
Sbjct: 26  PYSKYVYRYFVHQWPEFSFVALDN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,026
Number of Sequences: 5004
Number of extensions: 31971
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)