Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28j10
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 78 6e-15
06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377... 42 4e-04
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 40 0.001
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 2.1
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 28 4.8
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 27 8.4
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 77.8 bits (183), Expect = 6e-15
Identities = 43/134 (32%), Positives = 71/134 (52%)
Frame = +2
Query: 158 MGALFGKHKKVVSRVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRD 337
MG +F K KV T+ D+A+ +E +E +++ A++L+++ K+D
Sbjct: 1 MGNIFVKKPKV----TDVDRAILTLKTQRRKLAQFQQQLEKVIEAEKEAARQLVQQKKKD 56
Query: 338 RAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDIL 517
RA QE LL DT +EQ D+E A + V D LK GN ALK + + +
Sbjct: 57 RALIALKKKKAQEELLKQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAALKSIQNEI 116
Query: 518 NIDEIEKIMEESRE 559
NID+++K+M+++ E
Sbjct: 117 NIDDVQKLMDDTAE 130
>06_03_0717 +
23834965-23835051,23836760-23836859,23837685-23837770,
23837867-23837958,23838659-23838773,23838847-23839029
Length = 220
Score = 41.9 bits (94), Expect = 4e-04
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Frame = +2
Query: 161 GALFGKHK--KVVSRVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKR 334
G +FGK K + + DK L +EK + K + KR
Sbjct: 6 GKVFGKSKAQSQATALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKA---KNKR 62
Query: 335 DRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDI 514
Y++ + + QL +Q+ LE A+ + +D L+TG A+K +H
Sbjct: 63 AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIM-LEGAKATTETVDALRTGASAMKAMHKA 121
Query: 515 LNIDEIEKIMEESREGIDQPKR 580
NID+++K M+E + ++ ++
Sbjct: 122 TNIDDVDKTMDEINDNMENMRQ 143
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/99 (26%), Positives = 49/99 (49%)
Frame = +2
Query: 284 LEKDRKLAKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQV 463
LE+ ++ +K + KR Y++ + + QL +Q+ LE A+ +
Sbjct: 810 LERAKEFSKA---KNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIM-LEAAKATTET 865
Query: 464 LDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDQPKR 580
+D L+TG A+K + NID+++K M+E E + K+
Sbjct: 866 VDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMKQ 904
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 284 LEKDRKLAKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQV 463
L+++ L K +LEE K DR+ Q ++ TD + + L +LE + + +
Sbjct: 669 LDQELTLCKIILEEDKADRSEMMRLSGELQ-RMVQETDALKNEKDSLQKELERVEEKSSL 727
Query: 464 LDGLKTGNVALKKVHDILNIDE-IEKIMEESREGIDQPK 577
L + ++A+KK ++ E ++++++E + I++ K
Sbjct: 728 L--REKLSMAVKKGKGLVQEREGLKQVLDEKKSDIEKLK 764
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/94 (23%), Positives = 40/94 (42%)
Frame = +2
Query: 299 KLAKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLK 478
+L +K LE+ K +E L NT + + + D E Q E + +
Sbjct: 184 ELHRKRLEDRKAQTRQILLQEIINEELLAANTASDEAAINGVDTDDEVDQAE-EYESWRR 242
Query: 479 TGNVALKKVHDILNIDEIEKIMEESREGIDQPKR 580
+K++ + ID+ + IME+ D+PK+
Sbjct: 243 REMARIKRIREESGIDDDKSIMEDENPVADRPKK 276
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 371 QENLLHNTDTQLEKLEQLTHDLEFAQIEI-QVLDGLKTGNVALKKVHDILNIDEIEKIME 547
+E+LL + EKL+Q H L + E Q +D L+T N +++ LN + EK+ E
Sbjct: 550 RESLLQEHEALKEKLDQEYHQLAERKREFQQEIDALETHN---ERIKGYLNSKKGEKLNE 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,137,330
Number of Sequences: 37544
Number of extensions: 159003
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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