Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28j09
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 187 5e-48
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 187 7e-48
05_01_0043 - 295041-295173,296252-296537,296616-296697 186 9e-48
01_07_0267 + 42410174-42410252,42410679-42411097 175 3e-44
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 154 4e-38
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 74 1e-13
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 36 0.032
06_03_0363 + 19904002-19905792 32 0.39
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 30 1.2
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 30 1.2
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 30 1.6
09_01_0019 + 403078-404211 30 1.6
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 30 1.6
04_01_0244 - 3194141-3195091,3195301-3195312 30 1.6
07_03_1215 + 24937016-24937229,24937418-24937623,24938135-249382... 29 2.1
03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319 29 2.1
10_08_0401 + 17629912-17630376 29 2.7
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.7
08_02_0341 + 15994817-15994852,15995371-15995439,15995667-159959... 29 2.7
03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826 28 4.8
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 28 6.3
05_04_0242 + 19336663-19336789,19337071-19337290,19337392-193374... 27 8.4
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 187 bits (456), Expect = 5e-48
Identities = 89/131 (67%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Frame = +3
Query: 117 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 296
PFFG +GAASA+IFS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 12 PFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 71
Query: 297 VAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTAXQPRLF 473
+AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AI IVGDAGVR A QP+LF
Sbjct: 72 IAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLF 131
Query: 474 VGMILILIFAE 506
VGMILILIFAE
Sbjct: 132 VGMILILIFAE 142
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 111 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM--SVMRPELIMKSIIPVVMAGIIAI 284
Y F G +S + G A G A G A + + +P+L + I+ ++ A +A+
Sbjct: 87 YYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALAL 146
Query: 285 YGLVVAVLIA 314
YGL+V ++++
Sbjct: 147 YGLIVGIILS 156
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 187 bits (455), Expect = 7e-48
Identities = 88/131 (67%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Frame = +3
Query: 117 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 296
PFFG +GAASA++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 12 PFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 71
Query: 297 VAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTAXQPRLF 473
+AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AI IVGDAGVR A QP+LF
Sbjct: 72 IAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLF 131
Query: 474 VGMILILIFAE 506
VGMILILIFAE
Sbjct: 132 VGMILILIFAE 142
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 111 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM--SVMRPELIMKSIIPVVMAGIIAI 284
Y F G +S + G A G A G A + + +P+L + I+ ++ A +A+
Sbjct: 87 YYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALAL 146
Query: 285 YGLVVAVLIA 314
YGL+V ++++
Sbjct: 147 YGLIVGIILS 156
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 186 bits (454), Expect = 9e-48
Identities = 88/131 (67%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Frame = +3
Query: 117 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 296
PFFG +GAASA++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 13 PFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 72
Query: 297 VAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTAXQPRLF 473
+AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AI IVGDAGVR A QP+LF
Sbjct: 73 IAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLF 132
Query: 474 VGMILILIFAE 506
VGMILILIFAE
Sbjct: 133 VGMILILIFAE 143
Score = 33.9 bits (74), Expect = 0.097
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 102 NPIYGPFF---GVMGAASAIIFSALGAAYGTAKSGTGIAAM--SVMRPELIMKSIIPVVM 266
NP P+F G +S + G A G A G A + + +P+L + I+ ++
Sbjct: 82 NPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIF 141
Query: 267 AGIIAIYGLVVAVLIA 314
A +A+YGL+V ++++
Sbjct: 142 AEALALYGLIVGIILS 157
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 175 bits (425), Expect = 3e-44
Identities = 84/137 (61%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
Frame = +3
Query: 99 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 278
N + PF G +GAA A++FS +GAAYGTA+SG G+A M VMRPEL+MKSI+PVVMAG++
Sbjct: 6 NGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMAGVL 65
Query: 279 AIYGLVVAVLIAGALQEPA-NYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTA 455
IYGL++AV+I + A Y + G +HL AGLA G LAAG AI +VGDAGVR A
Sbjct: 66 GIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAGVRANA 125
Query: 456 XQPRLFVGMILILIFAE 506
QP+LFVGMILILIFAE
Sbjct: 126 QQPKLFVGMILILIFAE 142
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 135 GAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 314
G A+ + A G A G G+ A + +P+L + I+ ++ A + +YGL+V ++++
Sbjct: 99 GLATGLCALAAGLAIGVV-GDAGVRA-NAQQPKLFVGMILILIFAEALGLYGLIVGIILS 156
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 154 bits (374), Expect = 4e-38
Identities = 71/111 (63%), Positives = 91/111 (81%), Gaps = 1/111 (0%)
Frame = +3
Query: 117 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 296
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 14 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 73
Query: 297 VAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVR 446
+AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AI IVGDAGVR
Sbjct: 74 IAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 124
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +3
Query: 216 SVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 314
+ +P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 158 NAQQPKLFVGMILILIFAEALALYGLIVGIILS 190
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Frame = +3
Query: 123 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 302
F +G A +I S LGAA+G +G+ + ++ P + K++I V+ +AIYG++VA
Sbjct: 20 FSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVA 79
Query: 303 VLIAGALQEP----ANYP--LYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTAXQP 464
+++ L+ ++P L G+ +GL VGF+ L G + I+G + A
Sbjct: 80 IILQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCALSDAQNS 139
Query: 465 RLFVGMILILIF 500
LFV +++I IF
Sbjct: 140 SLFVKILVIEIF 151
>01_06_0836 - 32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 35.5 bits (78), Expect = 0.032
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = -3
Query: 500 ENKNKNHSDE*PRLXSSTTHACISHDAYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLE 321
E +KN DE P S+T C H+ YG+ G + + ++ VD P+V G+V +
Sbjct: 880 EKCSKNEHDEAPLGLSNT---CKEHE-YGDKGPENLTKPGEPASSVDVPYVNGIVD-NSD 934
Query: 320 GTSNQDSHDQTVDGNNTRHDD 258
+ S + TV T + D
Sbjct: 935 SVQEEPSVEATVSATETSNVD 955
>06_03_0363 + 19904002-19905792
Length = 596
Score = 31.9 bits (69), Expect = 0.39
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Frame = +3
Query: 105 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTG-----IAAMSVMRPELIMKSIIPVVMA 269
PIY +GAA +FS+L + T +A ++R + + P +
Sbjct: 400 PIYATVAVTLGAACVALFSSLDVLASVSSISTLFIFALVAVALLVRRYHVAGATTPGQLR 459
Query: 270 GIIAIYGLVVAVLIAGALQEPANYPL-YKGFIHLGAGLAVGFSGLAA 407
+A LVV I + + Y + G+ G G A G +GLAA
Sbjct: 460 TFLAFLALVVLSSIGVSAYYNSRYARRWPGYAAFGCGWAAGAAGLAA 506
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = -3
Query: 548 VQVDGDDKSVKTQYFSENKNKNHSDE*PRLXSSTT--HACISHDAYGETGSQTRESYSQT 375
+Q+DG KS Y S++ S + +L +S + + HD ET +++R
Sbjct: 2985 MQIDGISKS----YSSDSHATLQSSDSNQLVNSDSKFESSKKHDKTDETSNESRGDNPTH 3040
Query: 374 STQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGNN 273
S D+ K +VG N+D+ Q DG++
Sbjct: 3041 SCTNDDSHDKNLVGCSPSEDLNEDNSAQLADGDD 3074
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 383 SQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDR 255
S+ ++ E KG+VG SNQ HD T D +T D++
Sbjct: 190 SRLDNKIAEVDTKGIVG-TKPSASNQHQHDGTTDSRHTVEDEK 231
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 318 ALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTAXQPRLFVGMILI 491
AL+ P P+ +G + LG + V +GL +V A VRG GM+L+
Sbjct: 333 ALEAP---PMPRGSVGLGMAVRVAMAGLGTNRVAAVVSAAAVRGHNAGGGALEGMVLV 387
>09_01_0019 + 403078-404211
Length = 377
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -3
Query: 296 DQTVDGNNTRHDDRNDRLHDQLRPHHRHXXXXXXXXXXXXXXXXGAEDDSRRRPHNSKEG 117
D T D + + +DR R H + + HHR + SRRR H E
Sbjct: 293 DDTSDEDESGGEDRRRRRHRKRQHHHRKGASDGDSGSGASDSADDRKRSSRRRRHRKSES 352
Query: 116 S 114
S
Sbjct: 353 S 353
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 209 RHVGDEA*ADHEVDHSCRHGGYYCHLRSGRGCPDCWCPP 325
R V + AD D CR G SG + +CPP
Sbjct: 16 REVSEALTADSSADEECRRGSSSSSASSGDASSESYCPP 54
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 517 RPNTSAKIRIRIIPTNNLGX*AVPRTPASPTMXMAKPAARPENPTAKPAP 368
R T+A +RI++ P N P PA+P + A PAA P AP
Sbjct: 196 RKTTTAPVRIQLAPRNP----PPPAAPAAPPVPPAVPAAPAPAPVHMSAP 241
>07_03_1215 +
24937016-24937229,24937418-24937623,24938135-24938207,
24938619-24938812
Length = 228
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 415 AKPAARPENPTAKPAPKWM 359
AKPAA+P+ P KP P+ M
Sbjct: 93 AKPAAKPKKPPVKPLPEMM 111
>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
Length = 317
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 314 WCPPGASQLPPLQRVHPLG 370
W PPG +LPPL +H G
Sbjct: 44 WAPPGEPRLPPLLLIHGFG 62
>10_08_0401 + 17629912-17630376
Length = 154
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 129 VMGAASAIIFSALGAAYGTAKSGTGIAA 212
V GAA+ F+AL AY A+ G+AA
Sbjct: 111 VAGAAAVAAFAALAVAYAVARRRVGVAA 138
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 496 IRIRIIPTNNLGX*AVPRTPASPTMXMAKPAARPENPTAKPA 371
+R R PT+ A PR P P A PAA P P+ P+
Sbjct: 701 LRARRAPTSPPAA-ATPRAPTPPAAAAAAPAAPPALPSGLPS 741
>08_02_0341 +
15994817-15994852,15995371-15995439,15995667-15995973,
15996231-15996253
Length = 144
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 320 GTSNQDSHDQTVDGNNTRHDDRNDRL 243
G + + HD ++DG N +DD D L
Sbjct: 98 GAEDDNGHDVSIDGLNANNDDNGDEL 123
>03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826
Length = 196
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 360 IHLGAGLAVGFSGLAAGFAIXIVGDAGVRGTAXQP 464
+HL G+AVG GL G + + GD R A P
Sbjct: 160 VHLDVGVAVGDQGLEVG--LLVAGDEAERAQARAP 192
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 416 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTS 312
G G S+T VD+P VVGW GTS
Sbjct: 4 GGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTS 38
>05_04_0242 +
19336663-19336789,19337071-19337290,19337392-19337437,
19337559-19337675
Length = 169
Score = 27.5 bits (58), Expect = 8.4
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +3
Query: 105 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 284
PIY P G + +IF+ L G + S TG+ +S P +M + ++ + +
Sbjct: 54 PIYFPI-GNLATGFFVIFALLAGVVGVSTSLTGLHDVSQGYPASMMSAAAASIVTWTLTL 112
Query: 285 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSG-LAAGFAIXIV 428
+ +A P + + F + AG + +G L AG + I+
Sbjct: 113 LAMGLACKEISIGWRPPSLRALETFTIILAGTQLLCAGSLHAGAHVAII 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,413
Number of Sequences: 37544
Number of extensions: 415466
Number of successful extensions: 1546
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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