Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j07
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.1  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   4.1  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   5.4  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   7.2  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   7.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   9.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   9.5  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 428 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 327
           VS +  D Q QS V   LHY + + +   C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 171 RLVLCTRSVCSHLNAKPRATTL 106
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 324 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATXNEW 494
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 25  IWDSTSAKCLEPCDLRILEITY 90
           +WD  + KCL+  DLR    TY
Sbjct: 251 VWDLENFKCLDAFDLRSAFSTY 272


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 130 RKATRDNIIYRIFYKLFPKCEDRTVLSTLH*CC 32
           R  + +N I R+  +LFP CED      LH  C
Sbjct: 200 RYVSNENYIDRLI-ELFPLCEDLENTDDLHRLC 231


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 108  MLSRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEP 242
            +L    L  GA ++T      A   A  +A  D ++ ARP RG P
Sbjct: 984  LLQEEPLGRGARRRTPVVYDEAVRDAQWMAEMDMESEARPTRGRP 1028


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +3

Query: 426 HVKFGPKLAAWLDKE-------VEATXNEWNEGRNQTVKAL 527
           HV+   + A  LD+E       V+   N+W EG+   ++AL
Sbjct: 581 HVRMAQQKAEQLDEERSRLREPVQQIVNKWKEGKESNLRAL 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,600
Number of Sequences: 5004
Number of extensions: 50996
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)