Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j07
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    54   9e-08
U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    51   6e-07
U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical p...    31   0.40 
AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B prote...    31   0.40 
Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL023845-6|CAA19536.1|  168|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    27   6.5  
AJ871144-1|CAI38753.2|  476|Caenorhabditis elegans UDP-galactopy...    27   8.6  
AF125442-8|AAD12787.2|  476|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lecti...    27   8.6  

>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 26/79 (32%), Positives = 42/79 (53%)
 Frame = +3

Query: 240 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVY 419
           P K RL  +P+ WF  F   TG +GPY F  GL  +L +KE++V E + +  +  ++   
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161

Query: 420 VAHVKFGPKLAAWLDKEVE 476
           +     G K+ A L K+ +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQ 180


>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 25/55 (45%), Positives = 34/55 (61%)
 Frame = +3

Query: 219 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 383
           ARP+   P K RL  +P+ WF  F   TGV+GPY F  GL  +L +KE++V E +
Sbjct: 99  ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQ 151


>U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical
           protein R151.8 protein.
          Length = 731

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 492 IRXRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 334
           +R R LQ P P T   +   + +EP T     T    I  P    P CT +L D
Sbjct: 26  LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79


>AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B protein
           protein.
          Length = 315

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 492 IRXRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 334
           +R R LQ P P T   +   + +EP T     T    I  P    P CT +L D
Sbjct: 26  LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79


>Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 359 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 213
           LAA+ C  T   +V+       V E E   ++  K+   WL+P   SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350


>Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 359 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 213
           LAA+ C  T   +V+       V E E   ++  K+   WL+P   SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350


>AL023845-6|CAA19536.1|  168|Caenorhabditis elegans Hypothetical
           protein Y51B9A.8 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 CGSGNIPVQQGNLCNGARILLRTVTAGHGVCG 424
           C +GN  V  G+ C  A+++  T+T   G+ G
Sbjct: 36  CPAGNTEVSSGDCCPTAQVVNGTITCNGGLVG 67


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 257 WLYS*RMVPILPLENWCDGSLHFWC 331
           W Y    V ++ L NWC    H WC
Sbjct: 95  WFYLHSKVHLISLANWCSSVAH-WC 118


>AJ871144-1|CAI38753.2|  476|Caenorhabditis elegans
           UDP-galactopyranose mutase protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +3

Query: 114 SRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGF---IPEEWFQ 284
           SRVA       +  C+   A  + +D        F  P  G  G V       +P EWF+
Sbjct: 186 SRVAKLPQEKLEELCSMDQAELANADFGWGPNSYFTFPTYGGTGNVWNSMAKKLPNEWFK 245

Query: 285 FFHSKTGV 308
           F +  TGV
Sbjct: 246 FNNKVTGV 253


>AF125442-8|AAD12787.2|  476|Caenorhabditis elegans Hypothetical
           protein H04M03.4 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +3

Query: 114 SRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGF---IPEEWFQ 284
           SRVA       +  C+   A  + +D        F  P  G  G V       +P EWF+
Sbjct: 186 SRVAKLPQEKLEELCSMDQAELANADFGWGPNSYFTFPTYGGTGNVWNSMAKKLPNEWFK 245

Query: 285 FFHSKTGV 308
           F +  TGV
Sbjct: 246 FNNKVTGV 253


>AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lectin
           protein 85 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 368 IDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRAS 219
           + F  AQ  C +  +++   HTS +   L    R +  S   W+   RAS
Sbjct: 38  LKFTDAQSACYSQNQNLAVIHTSLQANFLASIVRTQTGSQKFWIGLSRAS 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,987,909
Number of Sequences: 27780
Number of extensions: 304959
Number of successful extensions: 812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)