Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j06
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             43   2e-04
11_01_0023 - 162079-162402                                             43   2e-04
01_05_0378 + 21628517-21628759                                         34   0.091
12_01_0474 + 3718846-3719097                                           31   0.85 
03_02_0738 - 10824121-10825572                                         27   7.9  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +1

Query: 124 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 303
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGAAAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 304 SXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           +            MSL FI  V  LH++GK
Sbjct: 66  APGLRLSPTMVLVMSLCFIGFVTALHVFGK 95


>11_01_0023 - 162079-162402
          Length = 107

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +1

Query: 124 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 303
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGASAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 304 SXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           +            MSL FI  V  LH++GK
Sbjct: 66  APGLRLSPTMVLVMSLCFIGFVTALHVFGK 95


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 33.9 bits (74), Expect = 0.091
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 268 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           G+  M +FYTD++            MS+ FIA V +LH++GK
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGK 74


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 268 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           G+  M +FYT+++            MS+ F A V +LH++GK
Sbjct: 35  GTSTMLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGK 76


>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 349 ETSLKQELAPL*LQENHRYRTSTFLQNQHQCFGFWLQL 236
           E   +  L  L + + HR+    FL+N +   GFW  +
Sbjct: 330 EADDQSALVFLLVTQRHRWGAKVFLENSYNLHGFWADI 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,961,241
Number of Sequences: 37544
Number of extensions: 204194
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)