Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28j01
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear recep...    27   7.2  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   7.2  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    27   9.5  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    27   9.5  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    27   9.5  

>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 290 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 379
           D  DD PP P  +GG+   GV   +   YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 185 ARPKLEMRAPPPCRVHEQSPT 123
           ARP   MRAPPP   +E  PT
Sbjct: 73  ARPPSAMRAPPPQPTYENRPT 93


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 155 PPCRVHEQSPTRQRMQGNMTTAYFSCFVLKFENTRYYE 42
           P CR H  +P R R   ++T +Y S    +  +T YYE
Sbjct: 43  PLCRAHTGNPIRNRQLESLTMSYVSS---RNISTEYYE 77


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +2

Query: 158 EPASRASAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 337
           +P  R   +    G   N+   G   GG   QW  N G  G   + +++    P   GG 
Sbjct: 454 KPVMRGRGFGGAGGGAGNHGQRGGQRGG--GQWGGNAGPGGYYPNHFNNGYDMPMPWGGG 511

Query: 338 YGNGVIVAKYSSG 376
           YG  +    Y  G
Sbjct: 512 YGGDMGYGAYGGG 524


>AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical
           protein F18A12.4 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 206 INYDDDGINCGGFHRQWETNNGKCGIC-GDPYD--DSPPRPHELGGAYGNGVIVAKYSSG 376
           + YD++G    G   +  T  GK G C  D YD  D P    ++ G +    I+A +   
Sbjct: 528 LGYDENGKPMDGIRLEHVTEYGKQGQCLVDQYDNYDDPVYGKKMNGTHSINEIIADWVGH 587

Query: 377 QV 382
           +V
Sbjct: 588 EV 589


>AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear receptor
           NHR-98 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 361 EVLLGTGHRHHRRDNRLPPRLLGIQTMHRPQQ*RTGMLREI-PPGIXR-WRHEVLPEEQW 534
           EVLL      ++  N L    +G+Q +  PQQ  + ++ +I   GI + W  E+L   +W
Sbjct: 90  EVLLNGSETPYQVSNVLQKLAIGLQNIRGPQQKVSQIVTKIGKEGIFKLWEEEMLRMAKW 149


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 361 EVLLGTGHRHHRRDNRLPPRLLGIQTMHRPQQ*RTGMLREI-PPGIXR-WRHEVLPEEQW 534
           EVLL      ++  N L    +G+Q +  PQQ  + ++ +I   GI + W  E+L   +W
Sbjct: 170 EVLLNGSETPYQVSNVLQKLAIGLQNIRGPQQKVSQIVTKIGKEGIFKLWEEEMLRMAKW 229


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 348 PLP*APPNSCGRGGESSYGSPQMPHFP 268
           P P  PP   GR GE   GSP  P  P
Sbjct: 188 PGPAGPPGENGRNGEPQPGSPGEPGRP 214


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 342 P*APPNSCGRGGESSYGSPQMPHFPL 265
           P  PP+ CG GG      PQ+P   L
Sbjct: 32  PPPPPSPCGCGGGGGLALPQLPPLSL 57


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 260 TNNGKCGICGDPYDDSPPRPHELGGA 337
           +N GKCG CG  ++    + H  G A
Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 333 PPNSCGRGGESSYGSPQMPHF 271
           PP    RGG   +G P  PHF
Sbjct: 782 PPPPSFRGGRGGHGGPPPPHF 802


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 260 TNNGKCGICGDPYDDSPPRPHELGGA 337
           +N GKCG CG  ++    + H  G A
Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,941
Number of Sequences: 27780
Number of extensions: 299745
Number of successful extensions: 977
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)