Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i24
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0002 - 6858257-6861205                                           29   2.0  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   2.6  
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403...    29   2.6  
12_02_1241 - 27286095-27286979                                         28   4.6  
11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405...    27   8.1  
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    27   8.1  

>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 128 DDDTVRSTPSHHRSRPVHV*RTPDDPQPV 214
           D+ +V S P HHR R V   R+P   +PV
Sbjct: 365 DERSVHSPPDHHRERRVERPRSPPRRRPV 393


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 140 VRSTPSHHRSRPVHV*RTPDDPQPV 214
           +RS PSHHR+  +HV +T +D +PV
Sbjct: 82  LRSWPSHHRA--LHVKKTIEDAEPV 104


>02_01_0548 +
           4035265-4035431,4035517-4035651,4035859-4036081,
           4036282-4036468,4036627-4036811,4037435-4037572,
           4037995-4038123
          Length = 387

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 132 MTRSALLLATIGLGLSTFSVRQMILNQSRRV*DKPVLPEQPAGASLS 272
           MT+S L L TI    S    +  +L Q+    D PV P  P G  LS
Sbjct: 334 MTQSGLFLRTIQGAASMTGRKVTVLRQAGAACDHPVDPAYPEGRYLS 380


>12_02_1241 - 27286095-27286979
          Length = 294

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 263 CSGGLFWEYWFVLNASRLVEDHLAYAKRGQAETDGG 156
           CSG   W +  +LNA+ L      Y KRG  + DGG
Sbjct: 247 CSGIGAWVFNTLLNAALLWVFLHCYGKRGVCDDDGG 282


>11_04_0328 +
           16437947-16438091,16439953-16440062,16440446-16440514,
           16440840-16440955,16441049-16441103,16441206-16441326,
           16441541-16441635,16441728-16441826
          Length = 269

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 320 VFFFQKTFCFCIVNCLRQACSGGLFWEYWFVL 225
           + FF KTF       L++ C     WEY F +
Sbjct: 157 LLFFAKTFSASFQRLLKKQCGNRATWEYPFAV 188


>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 62  ENDTSCPVRVKTHIFAA-SEP*EDDDTVRSTPSHHRSRPVHV*RTPDDPQPV*TRLGQTS 238
           E+  S P R +    AA S+P  +DD    TP+  R R      T D P       G  +
Sbjct: 209 ESPPSPPTRGRRRKRAATSDPPPEDDEEEGTPAQPRRRKRAA--TSDPPPEDDEEEGTPA 266

Query: 239 TPRTTRRSK 265
            PR  RR K
Sbjct: 267 PPRRRRRRK 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,727
Number of Sequences: 37544
Number of extensions: 243612
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)